|
| Status |
Public on Dec 13, 2023 |
| Title |
LO3_LN_RHIZO_ROOT_2 |
| Sample type |
SRA |
| |
|
| Source name |
LO3_LN_RHIZO_ROOT_2
|
| Organism |
Zea mays |
| Characteristics |
genotype: wild type (L03)
developmental stage: planting-date=19-JUN-20,harvest-date=05-SEP-20
tissue: roots
|
| Treatment protocol |
no treatment
|
| Growth protocol |
clay beads+peat Greenhouse
|
| Extracted molecule |
total RNA |
| Extraction protocol |
LO3_LN_RHIZO_ROOT_2(1ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:PT_Illumina_Stranded_mRNA_Ligation_Prep_Demi-volume_input250ng_B_17-11-2021.docx
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Genome_build: genome of Zeamays+Rhizophagus-irregularis(DAOM197198)
genome mapping and counts of reads by gene locus are done with STAR; exact multihits are removed and count only consistent PE reads (in PE case).
Supplementary_files_format_and_content: type:count file (txt); content:GeneID,counts_noStranded,counts_forwardStrand,counts_reverseStrand
|
| |
|
| Submission date |
Jun 23, 2023 |
| Last update date |
Dec 13, 2023 |
| Contact name |
Véronique BRUNAUD |
| E-mail(s) |
veronique.brunaud@inrae.fr
|
| Organization name |
INRAE - CNRS - UPSUD
|
| Lab |
IPS2
|
| Street address |
rue Noetzlin
|
| City |
Gif-sur-Yvette |
| ZIP/Postal code |
91190 |
| Country |
France |
| |
|
| Platform ID |
GPL25410 |
| Series (1) |
| GSE235654 |
responses of maize to the arbuscular fungus rhizophagus irregularis mitigate n deficiency stress-Physiological and molecular responses of maize to the arbuscular mycorrhizla fungus 5AMF) Rhizophagus irregularis mitigate nitrogen deficiency stress. |
|
| Relations |
| BioSample |
SAMN35879769 |
| SRA |
SRX20761949 |
