|
Status |
Public on Dec 17, 2023 |
Title |
JMat-baseline-ZA64_S18 |
Sample type |
SRA |
|
|
Source name |
fecal
|
Organism |
gut metagenome |
Characteristics |
host: Macaca mulatta tissue: gut microbiome seq target: 16s rRNA genotype: WT treatment: Ad-lib
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was isolated using a Zymo Research Quick-DNA Fecal/Soil Microbe Miniprep Kit (catalog D6010) DNA libraries were prepared for sequencing using standard Illumina protocols
|
|
|
Library strategy |
OTHER |
Library source |
genomic |
Library selection |
other |
Instrument model |
Illumina HiSeq 2500 |
|
|
Data processing |
Illumina Casava1.7 software used for basecalling. Sequence reads were trimmed using cutadapter QIIME2.0 microbiome pipeline OTU tables after rarefaction Assembly: hg38 Supplementary files format and content: tab-delimited taxon dataset Library strategy: 16S RNA amplicon sequencing
|
|
|
Submission date |
Jun 26, 2023 |
Last update date |
Dec 17, 2023 |
Contact name |
Bongsoo Park |
E-mail(s) |
bongsoo.park@nih.gov
|
Phone |
1-410-558-8510
|
Organization name |
National Institute on Aging
|
Department |
Translational Gerontology Branch
|
Lab |
Epigenetics and Stem Cell Aging
|
Street address |
251 Bayview Blvd
|
City |
Baltimore |
State/province |
Maryland |
ZIP/Postal code |
21224 |
Country |
USA |
|
|
Platform ID |
GPL33529 |
Series (1) |
GSE235769 |
The effects of periodic restricted feeding on Rhesus Macaques |
|
Relations |
BioSample |
SAMN35993873 |
SRA |
SRX20787516 |