|
| Status |
Public on Dec 17, 2023 |
| Title |
Jmat-C6D8-MRI_S134 |
| Sample type |
SRA |
| |
|
| Source name |
fecal
|
| Organism |
gut metagenome |
| Characteristics |
host: Macaca mulatta
tissue: gut microbiome
seq target: 16s rRNA
genotype: WT
treatment: Ad-lib
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was isolated using a Zymo Research Quick-DNA Fecal/Soil Microbe Miniprep Kit (catalog D6010)
DNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
Illumina Casava1.7 software used for basecalling.
Sequence reads were trimmed using cutadapter
QIIME2.0 microbiome pipeline
OTU tables after rarefaction
Assembly: hg38
Supplementary files format and content: tab-delimited taxon dataset
Library strategy: 16S RNA amplicon sequencing
|
| |
|
| Submission date |
Jun 26, 2023 |
| Last update date |
Dec 17, 2023 |
| Contact name |
Bongsoo Park |
| E-mail(s) |
bongsoo.park@nih.gov
|
| Phone |
1-410-558-8510
|
| Organization name |
National Institute on Aging
|
| Department |
Translational Gerontology Branch
|
| Lab |
Epigenetics and Stem Cell Aging
|
| Street address |
251 Bayview Blvd
|
| City |
Baltimore |
| State/province |
Maryland |
| ZIP/Postal code |
21224 |
| Country |
USA |
| |
|
| Platform ID |
GPL33529 |
| Series (1) |
| GSE235769 |
The effects of periodic restricted feeding on Rhesus Macaques |
|
| Relations |
| BioSample |
SAMN35993867 |
| SRA |
SRX20787522 |
