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GEO accession:
Sample GSM768610
Query DataSets for GSM768610
Status
Public on Aug 15, 2011
Title
oral_milddysplasia_1434
Sample type
SAGE
Anchor
NlaIII
Tag Count
135760
Tag Length
10
Source name
oral biopsy, left floor of mouth
Organism
Homo sapiens
Characteristics
tissue: Left floor of mouth
dysplasia: mild
gender: female
age: 44
smoking status: smoker
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by guanidium isothiocyanate and phenol/chloroform extraction.
Data processing
Raw SAGE tags, excluding linker and ditags.
Submission date
Jul 28, 2011
Last update date
Aug 15, 2011
Contact name
Ewan Gibb
E-mail(s)
egibb@bccrc.ca
Organization name
BC Cancer Agency Research Centre
Street address
675 West 10th Ave
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE31021
Profiling long non-coding RNA expression in oral premalignant lesions.
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
875
6445.20
AAAAAAAAAC
3
22.10
AAAAAAAAAG
11
81.03
AAAAAAAAAT
3
22.10
AAAAAAAACC
2
14.73
AAAAAAAAGA
10
73.66
AAAAAAAAGC
1
7.37
AAAAAAAAGG
1
7.37
AAAAAAAATG
3
22.10
AAAAAAAATT
1
7.37
AAAAAAACAA
2
14.73
AAAAAAACTA
1
7.37
AAAAAAAGAA
6
44.20
AAAAAAAGCA
2
14.73
AAAAAAAGGA
2
14.73
AAAAAAAGGT
1
7.37
AAAAAAATAA
3
22.10
AAAAAAATCA
7
51.56
AAAAAAATGA
1
7.37
AAAAAAATGG
3
22.10
Total number of rows:
31212
Table truncated, full table size
561 Kbytes
.
Supplementary data files not provided
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