|
| Status |
Public on Mar 19, 2012 |
| Title |
BMS16 |
| Sample type |
RNA |
| |
|
| Source name |
stool RNA breast fed
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
age: 3 months
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
PolyA RNA was extracted from stool samples following the protocol published in Biomarkers, 2003, Jan-Feb;8(1):51-61.
|
| Label |
biotin
|
| Label protocol |
Ambion MessageAmp II aRNA Amplification and Biotin Enhanced kits: Manual Labelled cRNA Target preparation following manufacturer's instructions http://www.ambion.com/techlib/prot/fm_1751.pdf and http://www.ambion.com/techlib/prot/fm_1791.pdf
|
| |
|
| Hybridization protocol |
Codelink Gene Expression System: Single-Assay Bioarray Hybridization and Detection according to manufacturer's instructions http://www.appliedmicroarrays.com/pdf/codelink_bioarray_processing_protocol.pdf
|
| Scan protocol |
Codelink Gene Expression System: Single-Assay Bioarray Hybridization and Detection according to manufacturer's instructions http://www.appliedmicroarrays.com/application_notes/63005079.pdf
|
| Description |
Raw data file: T00346117_BMS16_1.TXT
|
| Data processing |
Median normalized values derived from Codelink Expression Analysis Version 5.0
|
| |
|
| Submission date |
Jul 31, 2011 |
| Last update date |
Mar 22, 2012 |
| Contact name |
Jennifer Goldsby |
| E-mail(s) |
jsgoldsby@tamu.edu
|
| Phone |
979-845-3908
|
| Organization name |
Texas A&M University
|
| Department |
Nutrition and Food Sciences
|
| Street address |
112 Cater-Mattil
|
| City |
College Station |
| State/province |
TX |
| ZIP/Postal code |
77845 |
| Country |
USA |
| |
|
| Platform ID |
GPL2895 |
| Series (1) |
| GSE31075 |
Mutualism between gut microbiota and the host as revealed in a comparative study of breast-fed versus formula-fed infants |
|
