|
Status |
Public on May 06, 2024 |
Title |
S106_XBP1S_RU-_gut_rep1 |
Sample type |
SRA |
|
|
Source name |
Gut
|
Organism |
Drosophila melanogaster |
Characteristics |
tissue: Gut genotype: S106>Xbp1s treatment: RU-
|
Treatment protocol |
treat with RU486 +/- for 7 days
|
Extracted molecule |
polyA RNA |
Extraction protocol |
Trizol_cholofrom pair-end
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
Quality control with fastqc Alignment with hisat2 Read counts with featureCounts Differentially expression analysis with deseq2 Salmon to confirm Xbp1U samples Assembly: Drosophila Melanogaster dm6 (r6.47) Supplementary files format and content: Differentially expression results for each genotype/tissues
|
|
|
Submission date |
Oct 25, 2023 |
Last update date |
May 06, 2024 |
Contact name |
MengJia Li |
E-mail(s) |
cmlf1413@gmail.com
|
Phone |
07763753347
|
Organization name |
University College London
|
Street address |
flat38 midhopse house, midhope street
|
City |
LONDON |
State/province |
Please Select |
ZIP/Postal code |
WC1H 8HH |
Country |
United Kingdom |
|
|
Platform ID |
GPL25244 |
Series (1) |
GSE246232 |
Xbp1 overexpression in the gut and fat body extend Drosophila lifespan |
|
Relations |
BioSample |
SAMN37986802 |
SRA |
SRX22231532 |