|
| Status |
Public on May 06, 2024 |
| Title |
S106_XBP1U_RU-_gut_rep2 |
| Sample type |
SRA |
| |
|
| Source name |
Gut
|
| Organism |
Drosophila melanogaster |
| Characteristics |
tissue: Gut
genotype: S106>Xbp1U
treatment: RU-
|
| Treatment protocol |
treat with RU486 +/- for 7 days
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Trizol_cholofrom
pair-end
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Quality control with fastqc
Alignment with hisat2
Read counts with featureCounts
Differentially expression analysis with deseq2
Salmon to confirm Xbp1U samples
Assembly: Drosophila Melanogaster dm6 (r6.47)
Supplementary files format and content: Differentially expression results for each genotype/tissues
|
| |
|
| Submission date |
Oct 25, 2023 |
| Last update date |
May 06, 2024 |
| Contact name |
MengJia Li |
| E-mail(s) |
cmlf1413@gmail.com
|
| Phone |
07763753347
|
| Organization name |
University College London
|
| Street address |
flat38 midhopse house, midhope street
|
| City |
LONDON |
| State/province |
Please Select |
| ZIP/Postal code |
WC1H 8HH |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL25244 |
| Series (1) |
| GSE246232 |
Xbp1 overexpression in the gut and fat body extend Drosophila lifespan |
|
| Relations |
| BioSample |
SAMN37986787 |
| SRA |
SRX22231547 |
