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Sample GSM78880

Query DataSets for GSM78880

Status

Public on Oct 25, 2005

Title

Radium Human 22k v2.0, NOWAC04

Sample type

RNA

Channel 1

Source name

Stratagen reference

Organism

Characteristics

Stratagen reference

Extracted molecule

total RNA

Label

Cy3

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Channel 2

Source name

NOWAC04

Organism

Characteristics

HRT use 10.4 pmol/ug cRNA

Extracted molecule

total RNA

Label

Cy5

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Hybridization protocol

use of stabilization and drying solution, Agilent, Palo Alto, CA

Description

Whole blood samples collectedin PAXgene tubes

Data processing

Agilent Feature Extraction software version A.7.5.1 (default settings)

Submission date

Oct 20, 2005

Last update date

Oct 21, 2005

Contact name

Vanessa Dumeaux

E-mail(s)

vanessad@rr-research.no

Organization name

"The Norwegian Women and Cancer project"

Street address

University of Tromsoe

City

Tromsoe

ZIP/Postal code

9037

Country

Norway

Platform ID

Series (1)

Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE	Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal	Raw mean signal of feature in Cy5 channel
Cy3MeanSignal	Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal	Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal	Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal	Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal	Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF	VALUE	Cy5MeanSignal	Cy3MeanSignal	Cy5BGMedianSignal	Cy3BGMedianSignal	Cy5BGMeanSignal	Cy3BGMeanSignal	Cy5ProcessedSignal	Cy3ProcessedSignal
1	null	115.7759	908.569	45	59	45.38298	59.09574	367.3224	4507.162
2	null	69.25455	246.2545	45	60	45.31022	60	55.90844	129.022
3	null	110.5763	296.322	45	60	45.82971	60.17029	395.5063	469.8234
4	null	372.0536	1131.464	46	59	45.75445	59.98221	2185.579	6335.273
5	null	294.1071	467.8036	45	60	45.09574	60.45035	1691.623	1713.41
6	null	79.84746	296.3559	45	60	44.79537	60.42471	128.6581	409.848
7	null	87.74138	867.6724	45	61	45.025	60.74643	162.39	4002.215
8	null	667.7333	440.4667	46	61	45.65385	61.05245	4370.493	1575.884
9	null	219.4545	404.3818	45	60	45.54804	60.67972	1167.855	1261.089
10	null	74	254.1452	46	60	45.75972	60.78445	75.68044	190.9565
11	null	100.4	255.4667	45	60	45.67986	60.84173	333.8142	233.2344
12	null	79.05	336.6	46	61	45.57895	60.83835	116.5504	620.1273
13	null	72.66667	245.8833	46	61	45.57857	61.04643	62.44696	152.0552
14	null	85.24561	878.3333	45	61	44.96014	61.48551	143.648	4034.492
15	null	572.9818	1109.036	46	62	45.90541	61.85135	3622.445	6203.563
16	null	96.16129	251.0323	46	61	45.5233	61.03584	297.3319	210.4294
17	-0.4146045103	72.55738	246.8852	46	62	45.8231	62.13357	60.99229	158.4453
18	null	168.6667	296.1111	46	61	45.79545	61.15152	846.9997	528.6632
20	null	78.375	301.4107	45	61	45.61567	61.3209	113.8943	440.2293
21	null	88.25862	896.431	46	61	46.24746	61.17966	165.8524	4212.961

Total number of rows: 22153

Table truncated, full table size 1666 Kbytes.

Supplementary data files not provided

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