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Sample GSM78882

Query DataSets for GSM78882

Status

Public on Oct 25, 2005

Title

Radium Human 22k v2.0, NOWAC12

Sample type

RNA

Channel 1

Source name

Stratagen reference

Organism

Characteristics

Stratagen reference

Extracted molecule

total RNA

Label

Cy3

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Channel 2

Source name

NOWAC12

Organism

Characteristics

HRT use 15.3 pmol/ug cRNA

Extracted molecule

total RNA

Label

Cy5

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Hybridization protocol

use of stabilization and drying solution, Agilent, Palo Alto, CA

Description

Whole blood samples collectedin PAXgene tubes

Data processing

Agilent Feature Extraction software version A.7.5.1 (default settings)

Submission date

Oct 20, 2005

Last update date

Oct 21, 2005

Contact name

Vanessa Dumeaux

E-mail(s)

vanessad@rr-research.no

Organization name

"The Norwegian Women and Cancer project"

Street address

University of Tromsoe

City

Tromsoe

ZIP/Postal code

9037

Country

Norway

Platform ID

Series (1)

Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE	Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal	Raw mean signal of feature in Cy5 channel
Cy3MeanSignal	Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal	Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal	Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal	Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal	Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF	VALUE	Cy5MeanSignal	Cy3MeanSignal	Cy5BGMedianSignal	Cy3BGMedianSignal	Cy5BGMeanSignal	Cy3BGMeanSignal	Cy5ProcessedSignal	Cy3ProcessedSignal
1	-1.274098391	114.85	1213.35	45	54	45.74101	54.60432	302.7522	5690.962
2	null	76.47458	249.7797	45	55	45.42123	55.39041	48.91445	155.5237
3	null	99.59649	291	45.5	55	45.65	55.43571	219.9419	390.2463
4	null	554.8772	1406.912	45	55	45.2526	55.69204	3553.183	7065.279
5	null	261.8571	488.1071	45	56	45.053	56.00353	1428.715	1593.504
6	null	90.13559	285.5424	46	55	45.63605	55.55102	140.9267	354.1974
7	null	94.47458	1248.475	45	56	45.40741	56.38148	150.1844	5809.979
8	null	559.2623	460.5082	45	56	45.21352	56.10676	3649.771	1466.565
9	null	220.6333	381.8333	45	56	45.21942	55.69065	1131.401	981.9926
10	null	82.375	220.0893	45	56	44.95572	56.34317	79.28195	53.6279
11	null	108	240.5439	45	57	45.51601	57.14235	313.8447	157.1246
12	null	89.98333	324.65	45	57	45.63538	56.97112	137.4682	565.1651
13	null	81.27586	217.2069	45	56	45.3617	56.47518	69.14463	46.67101
14	null	92.68966	1289.655	45	56	45.63763	57.20209	139.1504	6049.502
15	null	619.7333	1243.517	45	57	45.20144	57.48201	4037.491	6129.144
16	null	105.9298	224.2807	45	57	45.94505	57.25641	309.5311	88.36839
17	null	79.32787	244.3443	46	57	45.81413	56.77695	48.77617	165.9901
18	null	183.2679	282.1429	46	58	46.16187	57.89928	879.9846	425.0859
20	null	92.08621	291.5862	45	57	45.2242	57.63345	162.2007	419.6102
21	null	95.18966	1343.776	45	57	45.37809	57.73145	160.5733	6404.854

Total number of rows: 22153

Table truncated, full table size 1661 Kbytes.

Supplementary data files not provided

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