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Sample GSM78904

Query DataSets for GSM78904

Status

Public on Oct 25, 2005

Title

Radium Human 22k v2.0, NOWAC73

Sample type

RNA

Channel 1

Source name

Stratagen reference

Organism

Characteristics

Stratagen reference

Extracted molecule

total RNA

Label

Cy3

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Channel 2

Source name

NOWAC73

Organism

Characteristics

HRT use 12.5 pmol/ug cRNA

Extracted molecule

total RNA

Label

Cy5

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Hybridization protocol

use of stabilization and drying solution, Agilent, Palo Alto, CA

Description

Whole blood samples collectedin PAXgene tubes

Data processing

Agilent Feature Extraction software version A.7.5.1 (default settings)

Submission date

Oct 20, 2005

Last update date

Oct 21, 2005

Contact name

Vanessa Dumeaux

E-mail(s)

vanessad@rr-research.no

Organization name

"The Norwegian Women and Cancer project"

Street address

University of Tromsoe

City

Tromsoe

ZIP/Postal code

9037

Country

Norway

Platform ID

Series (1)

Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE	Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal	Raw mean signal of feature in Cy5 channel
Cy3MeanSignal	Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal	Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal	Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal	Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal	Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF	VALUE	Cy5MeanSignal	Cy3MeanSignal	Cy5BGMedianSignal	Cy3BGMedianSignal	Cy5BGMeanSignal	Cy3BGMeanSignal	Cy5ProcessedSignal	Cy3ProcessedSignal
1	null	155.8824	927.1176	44	53	44.43448	53.26897	647.831	4309.829
2	null	69.96078	248.6667	44	53.5	44.38966	53.67931	67.13807	301.0924
3	null	91.84483	249.7241	45	56	45.22794	56.23529	261.617	355.1905
4	null	467.3621	820.2759	45	55	44.98233	54.91166	2744.571	3835.347
5	null	240.6667	378.7407	45	55	44.84965	55.15734	1279.233	1172.307
6	null	80.44262	221.1967	45	56	45.38462	55.72527	172.0526	214.2037
7	null	96.83871	867.7903	46	56	45.71481	56.65556	246.2074	3772.602
8	null	312.931	348.6207	45	56	45.23273	55.62909	1784.92	1020.023
9	null	145.0164	311.1803	45	57	45.05442	57.11565	634.9503	745.9111
10	null	71.76923	213.1346	45	56	45.28014	56.21631	89.65101	174.214
11	null	89.72131	196.1148	45	55	45.18148	55.24444	271.0652	120.3713
12	null	79.78846	280.0385	45	57	45.0365	57.05839	154.521	482.7292
13	null	68.74545	202.0727	45	56	45.02768	56.45675	59.78272	130.0373
14	null	81.19048	799.2222	45	57	44.93116	57.24275	138.1557	3230.931
15	null	516.902	748.6667	45	57	45.03136	57.223	3082.203	3431.607
16	null	84.86	207.96	45	56	45.28777	56.52518	218.3567	172.6357
17	null	68.41379	215.3966	45	56	44.97368	56.71429	55.48064	182.3881
18	null	125.2075	257.8679	45	57	45.46154	57.68498	515.4761	452.0506
20	null	71.21875	236.5	45	57	45.44484	56.879	82.54074	274.8512
21	null	77.32759	811.6897	45	58	45.68942	58.17406	110.6055	3237.485

Total number of rows: 22153

Table truncated, full table size 1660 Kbytes.

Supplementary data files not provided

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