GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM78921

Query DataSets for GSM78921

Status

Public on Oct 25, 2005

Title

Radium Human 22k v2.0, NOWAC02

Sample type

RNA

Channel 1

Source name

Stratagen reference

Organism

Characteristics

Stratagen reference

Extracted molecule

total RNA

Label

Cy3

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Channel 2

Source name

NOWAC02

Organism

Characteristics

no HRT use 15.6 pmol/ug cRNA

Extracted molecule

total RNA

Label

Cy5

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Hybridization protocol

use of stabilization and drying solution, Agilent, Palo Alto, CA

Description

Whole blood samples collectedin PAXgene tubes

Data processing

Agilent Feature Extraction software version A.7.5.1 (default settings)

Submission date

Oct 20, 2005

Last update date

Oct 21, 2005

Contact name

Vanessa Dumeaux

E-mail(s)

vanessad@rr-research.no

Organization name

"The Norwegian Women and Cancer project"

Street address

University of Tromsoe

City

Tromsoe

ZIP/Postal code

9037

Country

Norway

Platform ID

Series (1)

Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE	Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal	Raw mean signal of feature in Cy5 channel
Cy3MeanSignal	Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal	Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal	Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal	Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal	Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF	VALUE	Cy5MeanSignal	Cy3MeanSignal	Cy5BGMedianSignal	Cy3BGMedianSignal	Cy5BGMeanSignal	Cy3BGMeanSignal	Cy5ProcessedSignal	Cy3ProcessedSignal
1	null	82.01754	760.6667	46	67	45.77143	67.11071	352.0861	3352.528
2	null	66.77049	219.9016	45	66	45.57353	66.44853	108.31	154.826
3	0.02060965508	76.88333	244.55	46	68	46.06835	68.53237	301.5116	287.5374
4	null	297.7895	1051.807	45	67	45.5572	66.57565	3808.275	5371.582
5	null	133.1967	458.3443	45	67	45.46953	67.1828	1210.594	1601.89
6	null	73.91525	238.3898	46	68	45.46763	67.60791	247.0126	250.2614
7	null	71.11864	794.2034	45	67	45.18182	67.47902	168.4294	3462.475
8	null	112.1034	405.6897	45	67	45.40074	67.43015	867.9541	1267.813
9	null	131.95	351.6833	45	67	45.26132	67.22997	1206.851	953.217
10	null	62.91525	193.9831	45	67	45.40876	67.10949	70.13705	36.52382
11	0.4556722361	69.78689	200.3934	45	68	45.51748	67.95804	163.9711	57.42422
12	null	70	286.2281	45	69	45.18996	68.86738	165.0122	496.7732
13	null	62.61818	195.6545	45	68	45.24138	68.76207	69.79073	40.30812
14	-1.495782691	67.94545	816.1273	46	70	45.86594	69	112.5651	3525.221
15	null	235.4194	1149.548	45	70	45.25279	69.50558	2803.502	5967.624
16	null	70.80357	208.8571	45	68	44.94662	69.05694	186.5126	94.84083
17	null	63.41071	200.375	45	68	44.97473	68.73285	72.55638	61.56262
18	0.1705230907	93.98333	262.8167	45	69	45.51264	69.09747	592.1887	399.8868
20	-0.2734995192	69.60345	250.0172	46	69	45.95185	69.7	159.3953	299.2092
21	null	69.5614	857.3509	45	69	45.44912	69.8807	138.1232	3800.423

Total number of rows: 22153

Table truncated, full table size 1658 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |