GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM78947

Query DataSets for GSM78947

Status

Public on Oct 25, 2005

Title

Radium Human 22k v2.0, NOWAC55

Sample type

RNA

Channel 1

Source name

Stratagen reference

Organism

Characteristics

Stratagen reference

Extracted molecule

total RNA

Label

Cy3

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Channel 2

Source name

NOWAC55

Organism

Characteristics

no HRT use 17.3 pmol/ug cRNA

Extracted molecule

total RNA

Label

Cy5

Label protocol

Agilent Low RNA Input Fluorescent Linear Amplification Kit (Product Number 5184-3523).300 ng of total RNA were amplified and labeled

Hybridization protocol

use of stabilization and drying solution, Agilent, Palo Alto, CA

Description

Whole blood samples collectedin PAXgene tubes

Data processing

Agilent Feature Extraction software version A.7.5.1 (default settings)

Submission date

Oct 20, 2005

Last update date

Oct 21, 2005

Contact name

Vanessa Dumeaux

E-mail(s)

vanessad@rr-research.no

Organization name

"The Norwegian Women and Cancer project"

Street address

University of Tromsoe

City

Tromsoe

ZIP/Postal code

9037

Country

Norway

Platform ID

Series (1)

Whole-blood samples from women exposed to hormone replacement therapy

Data table header descriptions
ID_REF
VALUE	Log (base 10) of the ratio of the processed signals of Channel 2 to Channel 1
Cy5MeanSignal	Raw mean signal of feature in Cy5 channel
Cy3MeanSignal	Raw mean signal of feature in Cy3 channel
Cy5BGMedianSignal	Median local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMedianSignal	Median local background signal (local to corresponding feature) for Cy3 channel
Cy5BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy5 channel
Cy3BGMeanSignal	Mean local background signal (local to corresponding feature) for Cy3 channel
Cy5ProcessedSignal	Dye-normalized signal for Cy5 channel after surrogate algorithm. Used for computation of VALUE
Cy3ProcessedSignal	Dye-normalized signal for Cy3 channel after surrogate algorithm. Used for computation of VALUE

Data table
ID_REF	VALUE	Cy5MeanSignal	Cy3MeanSignal	Cy5BGMedianSignal	Cy3BGMedianSignal	Cy5BGMeanSignal	Cy3BGMeanSignal	Cy5ProcessedSignal	Cy3ProcessedSignal
1	null	90.95	1317.917	46	55.5	45.59058	57.19565	261.6481	7517.586
2	null	67.82759	150.069	45	56	45.32143	60.01071	55.07144	67.77758
3	null	83.45	160	45	57	45.33449	62.45645	188.4806	125.0929
4	null	351.9167	1109.333	46	58	45.94928	62.23188	3104.892	6371.556
5	null	176.9286	382.1786	46	58	45.74216	61.777	1228.316	1548.467
6	null	79.0339	166.2881	45	60	45.60072	63.35612	135.2913	159.433
7	null	77.08621	1300.586	46	61	45.45487	65.00722	103.5674	7440.417
8	null	278.6154	348.6154	45	60	45.57971	64.58696	2363.414	1336.184
9	null	140.1034	296.0862	46	60	45.56159	64.43478	809.0011	1000.025
10	null	71.88333	153.25	45	60	45.22472	63.31461	55.09563	75.39282
11	null	92.57895	166.0526	45	60	45.16491	64.70877	285.5155	159.3332
12	null	77.34483	201.2414	46	57	45.66904	62.2847	109.4083	374.2699
13	null	71.53333	148.8667	45	58	45.43972	63.18085	60.01915	79.80302
14	null	82.22034	1430.271	46	59	45.76512	64.50534	159.9704	8229.853
15	null	506.5833	1199.983	46	61	46.04878	64.47038	4819.661	6915.44
16	null	84.56667	160.45	46	57	45.80882	62.18382	198.6165	115.3492
17	null	68.54839	145.0968	45	57	45.78755	62.2967	63.44328	75.73672
18	null	118.4444	169.2593	46	55	45.44128	59.11744	565.4545	177.9875
20	null	73.2623	157.9672	46	58.5	45.66296	64.11852	64.82234	92.13981
21	null	82.5614	1468.825	46	59	45.78292	65.25979	162.0521	8467.407

Total number of rows: 22153

Table truncated, full table size 1649 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |