|
| Status |
Public on Sep 30, 2012 |
| Title |
Bacteroides fragilis_mid log phase_MM-Glucose_rep2 |
| Sample type |
RNA |
| |
|
| Source name |
Bacteroides fragilis_mid log phase_MM-Glucose_rep2
|
| Organism |
Bacteroides fragilis NCTC 9343 |
| Characteristics |
strain: NCTC9343
|
| Growth protocol |
2 ml minimal medium glucose (0.5%) culture of B.fragilis NCTC9343; grown to mid-log phase; replicate 2 of 2
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen Rneasy mini column extraction, Ambion DNA free treatment
|
| Label |
Biotin
|
| Label protocol |
Enzo Biochemicals Bioarray terminal labeling kit
|
| |
|
| Hybridization protocol |
Affymetrix
|
| Scan protocol |
Affymetrix
|
| Description |
Sample name: BFMMGlu_2
|
| Data processing |
The raw data were RMA-MS normalized using R-2.9.1. and log2 transformed, excluding other species present on chip.
|
| |
|
| Submission date |
Sep 19, 2011 |
| Last update date |
Sep 30, 2012 |
| Contact name |
Bart C. Weimer |
| E-mail(s) |
bcweimer@ucdavis.edu
|
| Phone |
530-754-0109
|
| Organization name |
University of California, Davis
|
| Department |
Population Health and Reproduction
|
| Lab |
Weimer lab
|
| Street address |
1 Shields Ave
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
| |
|
| Platform ID |
GPL14584 |
| Series (1) |
| GSE32207 |
In vitro transcriptional profiling of Bacteroides fragilis in glucose and human milk oligosaccharides |
|
