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Sample GSM809023 Query DataSets for GSM809023
Status Public on Feb 27, 2012
Title CHC909T
Sample type genomic
 
Source name CHC909T
Organism Homo sapiens
Characteristics sample: CHC909
tissue: Hepatocellular carcinoma
hbv infection: no
hcv infection: no
alcool intake: no
age (year): 69
gender (m=male; f=female): M
tumor diameter (mm): 210
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen samples from tumor and nontumoral liver tissue using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular carcinoma
Data processing standard Illumina protocol
 
Submission date Oct 05, 2011
Last update date Feb 27, 2012
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (1)
GSE32649 SNP data from 125 hepatocellular carcinomas and 112 paired normal samples

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 -0.1015 0.4976 11546 8102 1.11 0.892 2.002 0.431
rs1000002 -0.1464 0 9513 489 0.93 0.044 0.974 0.03
rs10000023 -0.16 0.481 10717 8551 1.03 0.943 1.972 0.472
rs1000003 -0.0573 0.4795 7555 5145 0.731 0.573 1.305 0.423
rs10000030 0.3813 1 303 4920 0.026 0.591 0.618 0.972
rs10000037 0.0512 1 402 7121 0.035 0.855 0.89 0.974
rs10000041 0.0884 0.4967 9102 5759 0.948 0.68 1.628 0.396
rs10000042 0.0903 1 497 7689 0.044 0.858 0.902 0.968
rs10000049 0.1025 0.0025 14378 746 1.265 0.061 1.326 0.031
rs1000007 -0.0064 0.4935 7427 6280 0.772 0.745 1.517 0.489
rs10000073 -0.0328 0 11122 377 0.98 0.027 1.006 0.017
rs10000081 0.2636 0 10940 570 1.053 0.055 1.108 0.033
rs10000092 0.1041 0 8811 263 0.848 0.023 0.871 0.017
rs10000105 -0.0656 0.9953 948 10774 0.071 1.106 1.177 0.959
rs10000119 -0.0029 1 526 11067 0.045 1.234 1.279 0.977
rs10000124 -0.2033 1 426 10677 0.036 1.19 1.226 0.981
rs10000147 0.1313 0.0048 5561 440 0.522 0.045 0.568 0.055
rs10000154 0.2209 0.4533 6527 4836 0.626 0.534 1.16 0.45
rs1000016 0.2065 0 7405 392 0.775 0.039 0.815 0.032
rs10000160 0.2241 1 400 7104 0.034 0.793 0.827 0.972

Total number of rows: 731442

Table truncated, full table size 39416 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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