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Sample GSM809024 Query DataSets for GSM809024
Status Public on Feb 27, 2012
Title CHC983T
Sample type genomic
 
Source name CHC983T
Organism Homo sapiens
Characteristics sample: CHC983
tissue: Hepatocellular carcinoma
hbv infection: no
hcv infection: no
alcool intake: yes
age (year): 53
gender (m=male; f=female): M
tumor diameter (mm): 50
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen samples from tumor and nontumoral liver tissue using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular carcinoma
Data processing standard Illumina protocol
 
Submission date Oct 05, 2011
Last update date Feb 27, 2012
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (1)
GSE32649 SNP data from 125 hepatocellular carcinomas and 112 paired normal samples

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 -0.0884 1 267 15360 0.014 1.402 1.416 0.993
rs1000002 -0.205 0.4017 7343 4261 0.62 0.387 1.008 0.355
rs10000023 -0.095 0.9982 918 16504 0.068 1.506 1.574 0.971
rs1000003 -0.0625 0 12203 829 1.038 0.062 1.1 0.038
rs10000030 0.4328 1 294 6261 0.022 0.62 0.642 0.977
rs10000037 -0.0883 0.5294 5762 5179 0.522 0.507 1.028 0.491
rs10000041 -0.0849 0 14518 760 1.324 0.059 1.383 0.028
rs10000042 0.063 1 485 9299 0.035 0.849 0.883 0.974
rs10000049 0.0257 9e-04 15765 848 1.202 0.055 1.256 0.029
rs1000007 0.0187 0 13577 349 1.239 0.019 1.258 0.01
rs10000073 -0.1074 0.0028 12109 570 0.923 0.035 0.959 0.024
rs10000081 0.1435 0 11794 537 0.978 0.039 1.017 0.025
rs10000092 0.0792 0 9946 452 0.824 0.033 0.857 0.025
rs10000105 0.0663 0.9925 1273 14368 0.082 1.209 1.291 0.957
rs10000119 0.1117 0.9943 827 14554 0.061 1.328 1.389 0.971
rs10000124 -0.2126 0.997 631 12903 0.046 1.177 1.223 0.975
rs10000147 0.4131 0 7889 389 0.655 0.027 0.682 0.026
rs10000154 0.1216 0.5019 6702 6019 0.553 0.544 1.097 0.495
rs1000016 0.1262 0 8201 300 0.748 0.02 0.768 0.017
rs10000160 0.1827 1 687 8297 0.052 0.757 0.809 0.957

Total number of rows: 731442

Table truncated, full table size 39650 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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