NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM809027 Query DataSets for GSM809027
Status Public on Feb 27, 2012
Title CHC428N
Sample type genomic
 
Source name CHC428N
Organism Homo sapiens
Characteristics sample: CHC428
tissue: Paired normal
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen samples from tumor and nontumoral liver tissue using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Paired normal sample for tumor CHC429T
Data processing standard Illumina protocol
 
Submission date Oct 05, 2011
Last update date Feb 27, 2012
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (1)
GSE32649 SNP data from 125 hepatocellular carcinomas and 112 paired normal samples

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.0578 1 367 15234 0.024 1.547 1.571 0.99
rs1000002 -0.452 0.3829 5585 3106 0.532 0.314 0.846 0.34
rs10000023 -0.0401 0.0035 17102 797 1.604 0.068 1.672 0.027
rs1000003 0.1396 0.0047 12397 917 1.189 0.079 1.268 0.042
rs10000030 0.3429 0.9956 481 5010 0.045 0.551 0.595 0.948
rs10000037 0.0432 1 319 7793 0.024 0.857 0.881 0.982
rs10000041 -0.0812 0 13130 549 1.341 0.044 1.385 0.021
rs10000042 -0.1258 0.9893 596 7155 0.051 0.727 0.778 0.955
rs10000049 0.1201 0.4531 10301 8036 0.879 0.741 1.62 0.446
rs1000007 -0.0755 0.4887 7324 6480 0.74 0.704 1.443 0.484
rs10000073 -0.0668 0 11225 276 0.965 0.014 0.979 0.009
rs10000081 0.2418 0 11157 499 1.046 0.043 1.089 0.026
rs10000092 0.1336 0.4791 5614 4350 0.524 0.438 0.962 0.443
rs10000105 -0.1444 0.999 845 11226 0.062 1.05 1.112 0.962
rs10000119 0.1455 1 582 13494 0.045 1.371 1.416 0.979
rs10000124 -0.1462 0.5185 9610 8235 0.896 0.829 1.725 0.475
rs10000147 0.1844 0 6013 282 0.558 0.024 0.582 0.027
rs10000154 0.1919 0.4831 6370 5487 0.594 0.553 1.147 0.477
rs1000016 0.1986 0 7730 226 0.791 0.016 0.807 0.012
rs10000160 0.0574 0.9994 606 6797 0.052 0.691 0.743 0.952

Total number of rows: 731442

Table truncated, full table size 39633 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap