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Sample GSM809035 Query DataSets for GSM809035
Status Public on Feb 27, 2012
Title CHC1041T
Sample type genomic
 
Source name CHC1041T
Organism Homo sapiens
Characteristics sample: CHC1041
tissue: Hepatocellular carcinoma
hbv infection: no
hcv infection: no
alcool intake: no
age (year): 68
gender (m=male; f=female): M
tumor diameter (mm): 10
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen samples from tumor and nontumoral liver tissue using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular carcinoma
Data processing standard Illumina protocol
 
Submission date Oct 05, 2011
Last update date Feb 27, 2012
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (1)
GSE32649 SNP data from 125 hepatocellular carcinomas and 112 paired normal samples

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 -0.0174 1 408 13576 0.017 1.472 1.488 0.993
rs1000002 -0.2241 0.4301 6261 3778 0.597 0.403 0.999 0.378
rs10000023 -0.0721 0.9931 1088 14059 0.081 1.523 1.604 0.966
rs1000003 -0.0552 0.4792 7681 5335 0.732 0.574 1.306 0.423
rs10000030 0.3547 1 282 5147 0.014 0.596 0.61 0.985
rs10000037 -0.0314 1 465 6978 0.029 0.81 0.839 0.978
rs10000041 -0.064 0 13073 673 1.352 0.05 1.402 0.024
rs10000042 0.1723 0.9929 796 8290 0.06 0.897 0.956 0.958
rs10000049 -0.0787 0.4864 8675 7007 0.741 0.689 1.429 0.477
rs1000007 0.053 0 12383 219 1.282 0 1.282 0
rs10000073 -0.0208 0 11439 412 0.994 0.018 1.012 0.011
rs10000081 0.181 0.4765 6614 5415 0.619 0.575 1.194 0.477
rs10000092 0.0585 0 8482 549 0.803 0.044 0.847 0.034
rs10000105 -0.0057 0.9897 1221 11447 0.082 1.148 1.23 0.954
rs10000119 0.0298 0.9938 825 11578 0.059 1.254 1.313 0.97
rs10000124 -0.0574 1 649 12147 0.041 1.316 1.357 0.98
rs10000147 0.1253 0 5648 364 0.534 0.026 0.56 0.031
rs10000154 -0.097 0.5277 4859 4519 0.452 0.481 0.933 0.519
rs1000016 0.3142 0 8194 425 0.847 0.029 0.876 0.022
rs10000160 -0.0659 1 639 5877 0.047 0.635 0.682 0.953

Total number of rows: 731442

Table truncated, full table size 39749 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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