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Sample GSM809068 Query DataSets for GSM809068
Status Public on Feb 27, 2012
Title CHC1199N
Sample type genomic
 
Source name CHC1199N
Organism Homo sapiens
Characteristics sample: CHC1199
tissue: Paired normal
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen samples from tumor and nontumoral liver tissue using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Paired normal sample for tumor CHC1199T
Data processing standard Illumina protocol
 
Submission date Oct 05, 2011
Last update date Feb 27, 2012
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (1)
GSE32649 SNP data from 125 hepatocellular carcinomas and 112 paired normal samples

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 -0.0348 1 300 16670 0.018 1.454 1.471 0.992
rs1000002 0.0314 0.0131 12383 889 1.035 0.069 1.105 0.043
rs10000023 -0.0089 0.5268 13160 12865 1.063 1.117 2.18 0.516
rs1000003 0.0189 0 13326 589 1.115 0.042 1.156 0.024
rs10000030 0.1715 1 249 5586 0.018 0.518 0.536 0.978
rs10000037 -0.0376 0.4566 6879 5099 0.598 0.469 1.067 0.423
rs10000041 -0.2456 0 13593 621 1.188 0.049 1.237 0.026
rs10000042 0.1649 1 524 10445 0.038 0.91 0.948 0.974
rs10000049 0.0282 0.9885 1203 14077 0.081 1.13 1.211 0.954
rs1000007 0.0793 0.5407 8661 9052 0.752 0.836 1.588 0.534
rs10000073 -0.0179 0 13420 360 0.995 0.019 1.015 0.012
rs10000081 -0.1168 0 10059 440 0.816 0.034 0.849 0.026
rs10000092 0.22 0 11219 462 0.91 0.035 0.945 0.025
rs10000105 0.0763 1 873 15362 0.056 1.233 1.29 0.971
rs10000119 0.127 1 691 15482 0.05 1.35 1.4 0.977
rs10000124 -0.1349 0.4691 11929 8907 0.965 0.772 1.737 0.43
rs10000147 0.0757 0 6469 207 0.524 0.014 0.538 0.017
rs10000154 0.0801 0.5479 6092 6395 0.491 0.555 1.046 0.539
rs1000016 0.0137 0 7854 337 0.686 0.025 0.712 0.023
rs10000160 0.0646 1 238 8279 0.015 0.721 0.737 0.987

Total number of rows: 731442

Table truncated, full table size 39328 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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