|
Status |
Public on Mar 01, 2024 |
Title |
mutant zb10, V4 leaf green section, rep2 |
Sample type |
SRA |
|
|
Source name |
leaf
|
Organism |
Zea mays |
Characteristics |
tissue: leaf cell line: leaf cell type: leaf genotype: zb10 treatment: V4
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was harvested using Rneasy mini plus kit (Qiagen). 1.3 ug of total RNA was used for the construction of sequencing libraries. RNA libraries for RNA-seq were prepared using SMARTER mRNA-Seq Library Prep Kit fllowing manufacturer's protocols.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
CLC Genomics Workbench v11.0.1 Assembly: Read count extraction and normalization Supplementary files format and content: tab-delimited text file includes raw counts for each Sample
|
|
|
Submission date |
Feb 26, 2024 |
Last update date |
Mar 01, 2024 |
Contact name |
Qiang Huang |
E-mail(s) |
qianghuang2804@126.com
|
Organization name |
sichuan agriculture university
|
Street address |
No.211, Huimin Road, Wenjiang District
|
City |
Chengdu |
State/province |
SC |
ZIP/Postal code |
611130 |
Country |
China |
|
|
Platform ID |
GPL25410 |
Series (1) |
GSE259213 |
Loss-of-function mutation of Plastid Terminal Oxidase (ZmPTOX) cause zebra leaf and white kernel by affecting plastid development in maize |
|
Relations |
BioSample |
SAMN40128143 |
SRA |
SRX23737588 |