|
| Status |
Public on Mar 01, 2024 |
| Title |
WT, 16DAP endosperm, rep2 |
| Sample type |
SRA |
| |
|
| Source name |
endosperm
|
| Organism |
Zea mays |
| Characteristics |
tissue: endosperm
cell line: endosperm
cell type: endosperm
genotype: WT
treatment: 16DAP
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using Rneasy mini plus kit (Qiagen). 1.3 ug of total RNA was used for the construction of sequencing libraries.
RNA libraries for RNA-seq were prepared using SMARTER mRNA-Seq Library Prep Kit fllowing manufacturer's protocols.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
CLC Genomics Workbench v11.0.1
Assembly: Read count extraction and normalization
Supplementary files format and content: tab-delimited text file includes raw counts for each Sample
|
| |
|
| Submission date |
Feb 26, 2024 |
| Last update date |
Mar 01, 2024 |
| Contact name |
Qiang Huang |
| E-mail(s) |
qianghuang2804@126.com
|
| Organization name |
sichuan agriculture university
|
| Street address |
No.211, Huimin Road, Wenjiang District
|
| City |
Chengdu |
| State/province |
SC |
| ZIP/Postal code |
611130 |
| Country |
China |
| |
|
| Platform ID |
GPL25410 |
| Series (1) |
| GSE259213 |
Loss-of-function mutation of Plastid Terminal Oxidase (ZmPTOX) cause zebra leaf and white kernel by affecting plastid development in maize |
|
| Relations |
| BioSample |
SAMN40128134 |
| SRA |
SRX23737597 |
