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Sample GSM82285 Query DataSets for GSM82285
Status Public on Apr 30, 2007
Title 1988_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 14602.6836 129.9421 G 164.4462 14677.6836 4723 15969.2744 157 14.13855076 89.25525735 75.7583 75 9.5035 124 129.9421
1002 1 982.2737 8.7408 G 12.182 1057.2737 1170 595.7838 95 10.9980793 86.78977225 75.0549 75 7.8598 188 8.7408
1003 1 3.3922 0.0302 L 0.8889 79.3922 77 10.1616 51 8.058238983 89.31925018 75.2453 76 8.8795 110 0.0302
1004 1 3.3726 0.03 L 0.8831 81.3726 81 10.5737 51 8.058238983 92.14497677 77.2529 78 9.43 89 0.03
1005 1 7.0313 0.0626 L 0.9312 82.0313 83 11.6417 32 6.383076668 88.09077448 75.7039 75 8.7272 185 0.0626
1006 1 15.881 0.1413 G 1.0355 92.881 94 11.3225 42 7.312732697 89.69670284 76.033 77 8.4645 188 0.1413
1007 1 26.5333 0.2361 G 1.1419 101.5333 101 13.1624 60 8.740387917 88.91474555 75.5989 75 9.2765 188 0.2361
1008 1 15032.3096 133.7651 G 168.2247 15108.3096 6709 16373.2568 170 14.71226406 89.81031679 75.8417 76 9.2069 124 133.7651
1009 1 423.1277 3.7652 G 5.7031 497.1277 515 190.9846 94 10.94004154 87.16780747 74.522 74 8.7785 188 3.7652
1010 1 854.3626 7.6026 G 10.4552 930.3626 1040 521.5983 91 10.76405144 88.9859092 76.6409 76 8.6573 187 7.6026
1011 1 58.3378 0.5191 G 1.5079 135.3378 139 20.8691 74 9.706685066 89.75052526 76.4286 77 8.5003 188 0.5191
1012 1 22.193 0.1975 G 1.1016 99.193 98 11.3484 57 8.519076347 90.04330392 76.5165 77 8.6955 188 0.1975
1013 1 26.9107 0.2395 G 1.1543 102.9107 104 13.8581 56 8.444016457 89.15613458 76.3352 76 8.7708 188 0.2395
1014 1 66.8481 0.5948 G 1.6087 142.8481 144 26.4556 79 10.02925301 88.79600087 76.6648 76 8.5307 188 0.5948
1015 1 13498.7461 120.1187 G 152.8604 13575.7461 4980 14909.1523 148 13.72732544 88.81140132 77.25 77 7.8743 124 120.1187
1016 1 47.2769 0.4207 G 1.4002 122.2769 125 19.0937 65 9.097283363 87.32792384 75.533 75 8.2186 188 0.4207
1017 1 13.6757 0.1217 G 1.006 92.6757 93 9.5918 37 6.86366272 92.12125188 79.4231 79 8.7475 188 0.1217
1018 1 4.8438 0.0431 L 0.916 83.8438 83 10.6231 64 9.027033806 91.53604513 78.7203 79 8.3574 122 0.0431
1019 1 14.1951 0.1263 L 0.9774 93.1951 93 15.0644 41 7.225152016 95.34870047 79.2967 79 10.8991 188 0.1263
1020 1 17.3846 0.1547 G 1.0202 94.3846 94 11.1508 39 7.04672575 92.51383608 77.2747 77 10.3426 188 0.1547

Total number of rows: 54359

Table truncated, full table size 5833 Kbytes.




Supplementary file Size Download File type/resource
GSM82285.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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