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Sample GSM82287 Query DataSets for GSM82287
Status Public on Apr 30, 2007
Title 1989_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13187.0117 142.2683 G 148.1353 13264.0117 3939 15198.7666 166 14.53814888 89.53987231 75.9417 77 8.3599 124 142.2683
1002 1 808.7021 8.7247 G 9.7747 885.7021 965 458.6138 94 10.94004154 90.61139426 76.8571 77 9.0743 188 8.7247
1003 1 2.3882 0.0258 L 0.8708 80.3882 81 10.7091 85 10.40314198 92.31217291 77.0973 78 9.5414 191 0.0258
1004 1 8.2647 0.0892 L 0.9448 84.2647 85 9.7356 34 6.579524517 89.19219447 75.478 76 8.7948 188 0.0892
1005 1 10.8462 0.117 L 0.9802 85.8462 87 11.619 39 7.04672575 87.58226117 74.6429 75 8.3882 188 0.117
1006 1 27.1111 0.2925 G 1.1439 102.1111 99 11.0129 54 8.291859627 89.26399053 75.7747 75 9.5093 188 0.2925
1007 1 29.0328 0.3132 G 1.1431 104.0328 103 11.2628 61 8.812923431 91.01110959 76.6319 75 10.6741 188 0.3132
1008 1 14738.5576 159.0071 G 162.7181 14816.5576 4552 16653.6426 183 15.26443005 91.05658195 77.9833 78 8.7044 124 159.0071
1009 1 439.8387 4.7452 G 5.6834 516.8387 550 205.304 93 10.88169479 90.93831923 76.6209 77 9.2922 188 4.7452
1010 1 479.6207 5.1744 G 6.4643 552.6207 650 252.5467 87 10.52482033 85.48871952 74.1264 73 8.3258 188 5.1744
1011 1 204.3023 2.2041 G 2.9878 283.3023 298 75.4162 86 10.46415806 94.82035201 79.544 79 10.5469 188 2.2041
1012 1 35.9839 0.3882 G 1.2086 115.9839 115 15.3702 62 8.884866714 95.96486436 80.5659 80 10.6432 188 0.3882
1013 1 24.2 0.2611 G 1.0951 104.2 101 18.4818 55 8.368284225 95.15290262 81.0165 80 10.1019 188 0.2611
1014 1 9.6757 0.1044 L 0.9611 87.6757 90 10.9891 37 6.86366272 91.22275126 77.5659 78 8.8152 188 0.1044
1015 1 14381.2334 155.1521 G 161.4173 14458.2334 5143 15539.2412 139 13.30339432 89.57050784 77.3242 77 8.3803 188 155.1521
1016 1 75.25 0.8118 G 1.6668 152.25 152 28.247 68 9.304853439 91.34522617 77.2253 77 9.5635 188 0.8118
1017 1 35.8727 0.387 G 1.2448 111.8727 110 14.0455 55 8.368284225 89.87497729 76.3681 76 9.25 188 0.387
1018 1 9.0606 0.0978 L 0.9533 86.0606 85 11.241 33 6.482044697 90.27228272 77.4037 77 8.8482 167 0.0978
1019 1 4.7957 0.0517 L 0.8973 83.7957 83 11.7862 93 10.88169479 93.38638692 78.9444 79 9.5909 186 0.0517
1020 1 14.6667 0.1582 L 0.988 92.6667 92 12.1522 33 6.482044697 93.78950181 78.8571 78 10.5263 188 0.1582

Total number of rows: 54359

Table truncated, full table size 5811 Kbytes.




Supplementary file Size Download File type/resource
GSM82287.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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