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Sample GSM82288 Query DataSets for GSM82288
Status Public on Apr 30, 2007
Title 1989_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 15653.3877 147.0788 G 171.1992 15731.3877 6016 17356.8438 162 14.36192226 91.88938252 78.6 78 9.2596 124 147.0788
1002 1 902.6288 8.4811 G 10.9537 979.6288 1070 520.9264 97 11.11324596 89.43339892 76.8846 77 8.2889 188 8.4811
1003 1 0.9667 0.0091 L 0.8444 79.9667 79 11.6518 30 6.18038702 94.70711449 78.8242 79 10.4714 188 0.0091
1004 1 8.6452 0.0812 L 0.9491 85.6452 85 11.7048 31 6.282549381 90.24094424 77.1221 77 8.8273 178 0.0812
1005 1 7.0225 0.066 L 0.9305 82.0225 82 10.7107 89 10.64510822 88.1445169 75.5204 75 8.763 204 0.066
1006 1 27.5965 0.2593 G 1.1616 103.5965 102 10.6522 57 8.519076347 89.18415012 76.7253 76 8.7894 188 0.2593
1007 1 32.3846 0.3043 G 1.2075 108.3846 106 13.2453 65 9.097283363 89.76065846 76.6923 76 9.1738 188 0.3043
1008 1 16624.0684 156.1993 G 180.6101 16702.0684 7588 17277.6953 177 15.0121088 92.47581537 79.6833 78 9.6505 124 156.1993
1009 1 429.8081 4.0385 G 5.7142 506.8081 552 212.1109 99 11.22723103 88.69293563 77.3956 77 7.7953 188 4.0385
1010 1 508.5444 4.7783 G 6.7001 583.5444 633 263.0828 90 10.70474434 87.09512665 75.522 75 8.0634 188 4.7783
1011 1 283.2609 2.6615 G 4.0598 359.2609 372 141.7706 92 10.82303238 88.49132857 75.4725 76 8.3276 188 2.6615
1012 1 33.8154 0.3177 G 1.2307 107.8154 104 13.2826 65 9.097283363 87.60810831 74.4475 74 9.0721 187 0.3177
1013 1 25.6269 0.2408 G 1.1615 99.6269 99 11.4225 67 9.236181259 85.77797224 74.7569 74 7.852 187 0.2408
1014 1 14.2381 0.1338 G 1.0102 89.2381 89 9.2397 42 7.312732697 88.33511919 75.5879 75 8.8901 188 0.1338
1015 1 14237.8457 133.7784 G 159.0429 14315.8457 4425 15756.7158 151 13.86575508 90.01246604 78.6833 78 8.0083 124 133.7784
1016 1 79.4478 0.7465 G 1.7152 158.4478 162 31.2278 67 9.236181259 92.38101128 79.1067 79 8.9207 184 0.7465
1017 1 41.95 0.3942 G 1.308 117.95 118 19.1437 60 8.740387917 90.17499432 76.4505 76 9.45 188 0.3942
1018 1 6.1714 0.058 L 0.9179 84.1714 86 10.7557 35 6.675580978 91.69919987 78.1923 78 9.1328 188 0.058
1019 1 6.75 0.0634 L 0.9312 85.75 83 9.5164 32 6.383076668 92.08783025 78.7088 79 8.7252 188 0.0634
1020 1 15.8293 0.1487 G 1.0027 95.8293 98 13.1054 41 7.225152016 95.57087761 81.8462 80 10.3806 188 0.1487

Total number of rows: 54359

Table truncated, full table size 5822 Kbytes.




Supplementary file Size Download File type/resource
GSM82288.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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