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Sample GSM82303 Query DataSets for GSM82303
Status Public on Apr 30, 2007
Title 2037_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 9659.6621 95.6934 G 104.2017 9739.6621 4494 10006.2002 205 16.15593147 93.46931533 81.3738 80 8.9795 214 95.6934
1002 1 811.9026 8.0431 G 9.222 893.9026 1024 473.0044 115 12.10051823 96.93177789 81.8633 82 9.9545 121 8.0431
1003 1 2.8654 0.0284 L 0.8647 89.8654 89 14.5787 52 8.136857986 103.9220205 86.6842 87 11.2813 118 0.0284
1004 1 8.2131 0.0814 L 0.9262 86.2131 86 9.8665 61 8.812923431 93.07877753 79.8173 78 10.0525 108 0.0814
1005 1 7.7636 0.0769 L 0.9209 87.7636 89 12.705 55 8.368284225 95.29936048 81.0508 80 10.1996 122 0.0769
1006 1 27.3704 0.2711 G 1.1325 108.3704 107 10.8189 54 8.291859627 95.68903451 82.2198 81 9.7927 188 0.2711
1007 1 18.1525 0.1798 G 1.0554 100.1525 99 12.8126 59 8.667244911 94.89096603 82.6758 82 8.594 188 0.1798
1008 1 10291.8525 101.9562 G 111.4294 10370.8525 5395 10247.3281 201 15.99753571 93.07102527 79.744 79 9.3807 215 101.9562
1009 1 379.85 3.763 G 4.9324 459.85 482 168.8673 102 11.39607143 93.23044595 79.5889 80 8.8203 186 3.763
1010 1 586.7835 5.813 G 7.2139 666.7835 714 329.9373 97 11.11324596 92.42983372 80.3722 80 8.2866 186 5.813
1011 1 249.6979 2.4736 G 3.5675 328.6979 338 100.8428 96 11.05581284 92.13775268 79.7967 79 8.7585 188 2.4736
1012 1 44.3333 0.4392 G 1.3418 123.3333 122 19.0861 72 9.574614525 91.91638394 79.2376 79 8.6109 187 0.4392
1013 1 20.6809 0.2049 G 1.0858 99.6809 97 11.684 47 7.735777855 91.800403 79.453 79 8.5336 187 0.2049
1014 1 31.4571 0.3116 G 1.199 111.4571 109 13.7172 70 9.44069767 92.9551114 80.011 80 8.6367 188 0.3116
1015 1 10239.04 101.4331 G 109.4956 10319.04 6559 9799.4766 202 16.03728104 94.24163015 80.5263 80 9.4944 236 101.4331
1016 1 139.7159 1.3841 G 2.3341 219.7159 220 52.9172 88 10.58513451 94.13302286 79.9231 80 9.422 188 1.3841
1017 1 37.28 0.3693 G 1.2376 118.28 116 16.5131 75 9.772049904 95.57574044 80.8956 81 9.7172 188 0.3693
1018 1 8.3611 0.0828 L 0.9295 87.3611 90 11.8419 36 6.770275116 93.98829953 79.674 79 9.9922 187 0.0828
1019 1 10 0.0991 L 0.964 91 94 12.0376 42 7.312732697 94.40133588 80.467 81 8.9342 188 0.0991
1020 1 52.225 0.5174 G 1.3984 133.225 133 19.152 80 10.09253025 95.26766879 81.1086 81 9.5118 181 0.5174

Total number of rows: 54359

Table truncated, full table size 5824 Kbytes.




Supplementary file Size Download File type/resource
GSM82303.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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