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Sample GSM82304 Query DataSets for GSM82304
Status Public on Apr 30, 2007
Title 2037_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11231.0215 103.4967 G 122.6326 11310.0215 5854 10900.3877 187 15.43035316 92.22686448 79.3333 79 8.8179 124 103.4967
1002 1 871.2679 8.029 G 9.986 950.2679 1035 489.5905 114 12.04779243 95.16044799 80.7414 79 10.7736 120 8.029
1003 1 -2.6897 -0.0248 L 0.8139 79.3103 79 8.1202 29 6.076507568 97.44824365 82.3841 82 10.2988 170 -0.0248
1004 1 9.1026 0.0839 L 0.964 88.1026 89 9.9995 39 7.04672575 91.3887506 78.9231 79 8.2592 188 0.0839
1005 1 7 0.0645 L 0.9196 85 85 10.6256 31 6.282549381 92.43201817 78.6057 78 9.6213 181 0.0645
1006 1 24.7679 0.2282 G 1.1239 102.7679 102 11.1275 56 8.444016457 91.4382913 78.5 78 8.9589 186 0.2282
1007 1 22.2429 0.205 G 1.112 100.2429 99 10.4846 70 9.44069767 90.15021619 79.0549 78 8.1001 188 0.205
1008 1 10618.0361 97.8479 G 115.2136 10698.0361 5442 10553.9229 197 15.83755589 92.85393494 79.0407 80 8.5693 229 97.8479
1009 1 402.1386 3.7058 G 5.259 480.1386 501 174.5242 103 11.45179749 91.29901125 78.2308 78 8.866 188 3.7058
1010 1 628.8021 5.7946 G 7.6927 708.8021 752 344.453 96 11.05581284 92.13917037 79.768 80 8.0928 187 5.7946
1011 1 262.375 2.4179 G 3.6642 342.375 343 120.8003 96 11.05581284 93.43733362 78.6833 80 8.9582 186 2.4179
1012 1 42.3947 0.3907 G 1.3086 119.3947 120 17.7883 76 9.836981773 91.23771666 77.3462 77 9.4918 188 0.3907
1013 1 27.0448 0.2492 G 1.1719 103.0448 101 12.1562 67 9.236181259 87.92674879 75.9011 76 7.9512 188 0.2492
1014 1 34.5263 0.3182 G 1.2439 112.5263 115 16.1933 76 9.836981773 90.4645497 78.3901 78 8.3097 188 0.3182
1015 1 9910.8926 91.3314 G 106.8226 9990.8926 4429 10376.9395 209 16.31278801 93.52786396 80.1579 80 9.0186 236 91.3314
1016 1 129.7191 1.1954 G 2.2466 207.7191 210 42.4259 89 10.64510822 92.45987962 78.4654 78 9.6399 165 1.1954
1017 1 39.3 0.3622 G 1.291 116.3 115 13.8892 80 10.09253025 90.08627179 77.2747 77 8.7242 188 0.3622
1018 1 6.8286 0.0629 L 0.9224 85.8286 84 12.5368 35 6.675580978 93.04525451 78.0663 79 9.3635 187 0.0629
1019 1 11.6579 0.1074 L 0.9785 90.6579 90 11.9501 38 6.955796242 92.64967182 78.5465 79 9.0998 178 0.1074
1020 1 50.1184 0.4619 G 1.3978 128.1184 126 21.5803 76 9.836981773 91.65878906 78.4972 78 9.1059 183 0.4619

Total number of rows: 54359

Table truncated, full table size 5826 Kbytes.




Supplementary file Size Download File type/resource
GSM82304.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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