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Sample GSM82307 Query DataSets for GSM82307
Status Public on Apr 30, 2007
Title 2314_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11914.6387 99.5299 G 130.1099 11993.6387 8086 11854.6699 182 15.22266674 92.18085677 78.1333 79 8.7872 124 99.5299
1002 1 872.1909 7.2859 G 10.1458 952.1909 1069 490.1498 112 11.94164276 93.85077772 80.0847 80 9.2339 122 7.2859
1003 1 6.023 0.0503 L 0.9102 84.023 81 15.2572 87 10.52482033 92.30793159 78.7047 78 9.5386 201 0.0503
1004 1 6.6818 0.0558 L 0.9149 84.6818 82 16.033 88 10.58513451 92.56029685 78.5133 78 9.7069 234 0.0558
1005 1 11.5306 0.0963 L 0.994 87.5306 87 10.3571 49 7.898653984 88.05469498 76.7598 76 8.0365 185 0.0963
1006 1 26.9219 0.2249 G 1.1636 102.9219 100 12.189 64 9.027033806 88.45132536 76.2143 76 8.3009 188 0.2249
1007 1 20.4746 0.171 G 1.0637 99.4746 99 12.4497 59 8.667244911 93.51775777 79.3352 79 9.6785 188 0.171
1008 1 11777.4756 98.3841 G 126.0058 11856.4756 5232 12028.0908 189 15.51264858 94.09469388 79.364 79 10.0631 236 98.3841
1009 1 508.9053 4.2512 G 5.4542 589.9053 619 195.1923 95 10.9980793 108.1564567 83.5786 81 18.1043 165 4.2512
1010 1 451.7732 3.7739 G 5.9393 527.7732 553 223.8641 97 11.11324596 88.86064184 75.5659 76 8.5738 188 3.7739
1011 1 94.4302 0.7888 G 1.9049 171.4302 170 34.614 86 10.46415806 89.99364789 76.7418 77 8.6624 188 0.7888
1012 1 64.05 0.535 G 1.5774 139.05 138 23.9796 80 10.09253025 88.15281769 75.5 75 8.7685 188 0.535
1013 1 32.0405 0.2677 G 1.2019 106.0405 103 21.7743 74 9.706685066 88.22664621 74.8462 74 9.4844 188 0.2677
1014 1 44.1714 0.369 G 1.3625 119.1714 106 55.6096 70 9.44069767 87.46219278 75.3352 75 8.3081 188 0.369
1015 1 11068.7744 92.4639 G 124.0873 11145.7744 3726 12094.8135 197 15.83755589 89.82206524 77.1013 77 8.548 235 92.4639
1016 1 89.5172 0.7478 G 1.788 168.5172 167 30.2939 87 10.52482033 94.24929416 78.7182 79 10.1662 187 0.7478
1017 1 50.375 0.4208 G 1.4175 126.375 122 23.2306 80 10.09253025 89.15145862 76.4088 76 8.7676 187 0.4208
1018 1 4.2917 0.0359 L 0.8872 80.2917 78 11.5559 96 11.05581284 90.49682586 75.9859 76 9.6646 221 0.0359
1019 1 13.4286 0.1122 L 0.9871 89.4286 89 12.9804 49 7.898653984 90.59686774 77.3648 76 9.7312 165 0.1122
1020 1 44.3226 0.3703 I 1.2866 125.3226 109 63.9508 62 8.884866714 97.40644832 82.3886 81 10.9376 181 0.3703

Total number of rows: 54359

Table truncated, full table size 5838 Kbytes.




Supplementary file Size Download File type/resource
GSM82307.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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