NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM82311 Query DataSets for GSM82311
Status Public on Apr 30, 2007
Title 1990_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11380.6738 95.5757 G 123.0787 11460.6738 7196 10869.0967 198 15.87770271 93.1166326 80.319 80 8.7444 218 95.5757
1002 1 929.0342 7.8021 G 10.4633 1011.0342 956 563.8903 119 12.30916309 96.62659944 81.7583 82 9.7511 124 7.8021
1003 1 4.6563 0.0391 L 0.8822 85.6563 86 14.0192 32 6.383076668 97.08841567 82.1648 81 10.7256 188 0.0391
1004 1 7.34 0.0616 L 0.9089 87.34 90 9.7747 50 7.978845596 96.08982536 81.3391 80 10.7266 119 0.0616
1005 1 6.8295 0.0574 L 0.9177 85.8295 86 11.101 88 10.58513451 93.52687332 79.6802 79 9.6846 205 0.0574
1006 1 31.4333 0.264 G 1.1631 111.4333 108 13.021 60 8.740387917 95.80672097 80.7667 80 10.5378 156 0.264
1007 1 44.2949 0.372 G 1.3144 125.2949 127 16.7134 78 9.965575218 95.32457586 81.3094 81 9.5497 187 0.372
1008 1 11787.9482 98.996 G 125.4095 11868.9482 9481 11061.1797 196 15.79730797 94.6415344 81.3923 81 9.0944 217 98.996
1009 1 482.7319 4.054 G 5.9005 561.7319 573 199.0308 97 11.11324596 95.20021419 80.548 79 10.8001 183 4.054
1010 1 516.3196 4.3361 G 6.3106 596.3196 603 273.224 97 11.11324596 94.49562712 80.2566 80 9.6638 158 4.3361
1011 1 74.7349 0.6276 G 1.6383 154.7349 155 28.6512 83 10.28002357 94.45085809 80.1099 80 9.6339 188 0.6276
1012 1 50.4079 0.4233 G 1.4092 127.4079 129 24.1569 76 9.836981773 90.41403562 76.7637 77 8.9427 188 0.4233
1013 1 22.507 0.189 G 1.1043 100.507 99 12.8533 71 9.507891655 91.01617904 78.1923 78 8.6775 188 0.189
1014 1 11.4286 0.096 L 0.9858 89.4286 92 11.3011 49 7.898653984 90.72061603 78.5549 78 8.4804 188 0.096
1015 1 11082.7607 93.0738 G 122.1397 11161.7607 5552 11129.9072 205 16.15593147 91.3851801 79.2996 79 8.2568 235 93.0738
1016 1 209.6633 1.7608 G 3.1404 288.6633 298 81.9752 98 11.17038345 91.91814638 79.6243 79 8.6121 187 1.7608
1017 1 52.5581 0.4414 G 1.4059 132.5581 132 19.8867 86 10.46415806 94.28736604 80.2253 80 9.5249 188 0.4414
1018 1 13.1667 0.1106 G 1.0081 93.1667 95 11.0925 42 7.312732697 92.4153317 78.7253 80 8.2769 188 0.1106
1019 1 15.2885 0.1284 G 1.0003 97.2885 99 14.5527 52 8.136857986 97.2632993 81.3352 82 10.1755 188 0.1284
1020 1 43.5526 0.3658 G 1.2623 125.5526 125 23.5413 76 9.836981773 99.46374421 82.6049 82 11.6425 168 0.3658

Total number of rows: 54359

Table truncated, full table size 5837 Kbytes.




Supplementary file Size Download File type/resource
GSM82311.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap