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Sample GSM82321 Query DataSets for GSM82321
Status Public on Apr 30, 2007
Title 783_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13066.4395 185.6257 G 135.1393 13146.4395 6807 13550.4053 150 13.81976604 97.28067754 79.75 80 11.5205 124 185.6257
1002 1 789.2023 11.2116 G 9.4993 865.2023 1001 463.499 89 10.64510822 91.08109159 76.533 76 10.0541 188 11.2116
1003 1 10.25 0.1456 L 0.9372 88.25 87 14.2173 36 6.770275116 94.15879373 78.6048 78 10.7725 173 0.1456
1004 1 13.2581 0.1883 L 0.9665 93.2581 92 13.0852 31 6.282549381 96.49271114 79.6648 80 10.9951 188 0.1883
1005 1 9.4324 0.134 L 0.9327 85.4324 82 14.8334 37 6.86366272 91.59680846 77.4505 76 10.3979 188 0.134
1006 1 19.617 0.2787 G 1.0468 95.617 94 12.0187 47 7.735777855 91.33925929 76.4286 76 10.2262 188 0.2787
1007 1 22.3051 0.3169 G 1.094 97.3051 96 14.7686 59 8.667244911 88.94655868 76.0934 75 9.2977 188 0.3169
1008 1 14461.9688 205.451 G 145.2585 14541.9688 6842 15393.21 160 14.27299309 100.1109981 81.2917 80 13.4073 124 205.451
1009 1 362.6023 5.1512 G 4.8696 438.6023 488 171.796 88 10.58513451 90.07023518 75.8462 76 9.3802 188 5.1512
1010 1 619.9885 8.8077 G 7.2702 698.9885 790 331.8314 87 10.52482033 96.14442365 79.4751 79 11.4296 187 8.8077
1011 1 86.4359 1.2279 G 1.7481 162.4359 164 34.0387 78 9.965575218 92.92199253 77.3791 76 11.2813 188 1.2279
1012 1 45.0588 0.6401 G 1.3316 121.0588 122 17.0267 68 9.304853439 90.90992173 77.3626 76 9.9399 188 0.6401
1013 1 42.8082 0.6081 G 1.3194 120.8082 119 17.5442 73 9.640875816 91.56161999 78.1978 78 9.0411 188 0.6081
1014 1 2.5926 0.0368 L 0.8699 85.5926 87 13.9649 54 8.291859627 98.39867554 81.6167 83 10.2658 124 0.0368
1015 1 12326.4971 175.1139 G 123.5573 12409.4971 3643 13671.1777 149 13.77362347 100.4351988 83.1417 83 11.6235 124 175.1139
1016 1 124.4143 1.7675 G 2.1116 204.4143 215 54.5424 70 9.44069767 96.8074517 79.5899 80 11.205 143 1.7675
1017 1 7.3771 0.1048 L 0.9264 88.3771 89 15.4805 61 8.812923431 95.39921897 81.2417 81 9.5995 124 0.1048
1018 1 6.7941 0.0965 L 0.9246 84.7941 83 11.7993 34 6.579524517 91.70972212 78.3767 78 9.1398 152 0.0965
1019 1 2.0123 0.0286 L 0.8547 81.0123 79 11.8514 81 10.15541267 94.78686127 79.3082 79 10.5246 165 0.0286
1020 1 9.2059 0.1308 L 0.9427 92.2059 95 11.9208 34 6.579524517 97.8072592 82.467 83 9.8715 188 0.1308

Total number of rows: 54359

Table truncated, full table size 5829 Kbytes.




Supplementary file Size Download File type/resource
GSM82321.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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