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Sample GSM82326 Query DataSets for GSM82326
Status Public on Apr 30, 2007
Title 1842_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 17877.2949 239.7338 G 180.6373 17957.2949 7669 19707.2715 158 14.18350601 99.41075576 81.4 80 12.9405 124 239.7338
1002 1 685.3579 9.1906 G 7.2298 766.3579 873 356.6567 95 10.9980793 105.9996289 83.9879 81 16.6664 171 9.1906
1003 1 196.8913 2.6403 G 2.7212 279.8913 110 402.7743 46 7.653039932 102.855303 83.8046 83 13.2369 180 2.6403
1004 1 -3.9506 -0.053 L 0.7228 78.0494 78 12.0215 81 10.15541267 107.9782782 83.1814 82 17.3189 212 -0.053
1005 1 4.16 0.0558 L 0.6966 81.16 83 14.1892 50 7.978845596 116.5073332 81.6277 77 26.3382 96 0.0558
1006 1 11.4186 0.1531 L 0.6481 92.4186 84 35.5529 86 10.46415806 142.595709 88.3829 81 41.0638 230 0.1531
1007 1 33.9322 0.455 G 1.1634 113.9322 111 15.2336 59 8.667244911 97.93287508 81.3073 80 11.9552 185 0.455
1008 1 17319.0293 232.2475 G 171.0329 17404.0293 5281 19187.7148 177 15.0121088 101.7583904 83.925 85 11.1723 124 232.2475
1009 1 175.1023 2.3481 G 2.7149 255.1023 266 67.9254 88 10.58513451 93.9651624 80.8344 80 9.3101 169 2.3481
1010 1 434.9204 5.8323 G 5.4917 511.9204 574 203.8357 88 10.58513451 93.21743769 78.2632 77 10.8116 158 5.8323
1011 1 91.618 1.2286 G 1.8037 169.618 165 42.7852 89 10.64510822 94.03644363 78.5266 78 10.691 175 1.2286
1012 1 27.0889 0.3633 G 1.0879 106.0889 107 13.987 45 7.569397449 97.52110542 79.9066 79 12.3474 188 0.3633
1013 1 28.6721 0.3845 G 1.1031 104.6721 101 23.7857 61 8.812923431 94.88874799 78.3978 76 12.5925 187 0.3845
1014 1 21.2131 0.2845 G 1.0532 98.2131 97 19.6595 61 8.812923431 93.25251122 77.2857 77 10.835 123 0.2845
1015 1 17790.7676 238.5735 G 183.7319 17870.7676 3937 20304.7285 196 15.79730797 97.26543309 82.8246 80 11.5103 236 238.5735
1016 1 38.3433 0.5142 G 1.209 119.3433 119 18.0443 67 9.236181259 98.71474067 81.5934 81 11.8098 188 0.5142
1017 1 10.9444 0.1468 L 0.9424 89.9444 90 14.1173 90 10.70474434 95.43791421 78.8606 79 10.9586 216 0.1468
1018 1 2.2571 0.0303 L 0.8583 82.2571 82 13.6556 35 6.675580978 95.8353043 80.9451 80 10.5569 188 0.0303
1019 1 47.4225 0.6359 G 1.2655 127.4225 97 100.7739 71 9.507891655 100.6895329 80.8571 80 13.793 116 0.6359
1020 1 38.5316 0.5167 G 1.227 117.5316 113 23.4353 79 10.02925301 95.78712463 81.4535 79 11.1914 178 0.5167

Total number of rows: 54359

Table truncated, full table size 5842 Kbytes.




Supplementary file Size Download File type/resource
GSM82326.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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