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Sample GSM82333 Query DataSets for GSM82333
Status Public on Apr 30, 2007
Title 1587_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 17932.8574 173.0021 G 124.2313 18016.8574 15972 15335.166 150 13.81976604 145.0267331 89.825 84 40.6845 124 173.0021
1002 1 1469.6324 14.1779 G 16.4152 1546.6324 1751 971.1511 119 12.30916309 94.21963373 79.7034 77 11.4798 122 14.1779
1003 1 18.7895 0.1813 L 0.9978 105.7895 108 19.2588 38 6.955796242 106.0197233 86.961 87 12.6798 160 0.1813
1004 1 28.4906 0.2749 G 1.112 110.4906 109 18.1187 53 8.214724541 99.36514935 81.4066 82 11.5768 188 0.2749
1005 1 20.6346 0.1991 G 1.0637 96.6346 92 25.0669 52 8.136857986 90.84523047 76.8407 76 9.8968 188 0.1991
1006 1 34.3538 0.3314 G 1.2203 108.3538 107 22.1675 65 9.097283363 88.79432998 74.5843 74 9.8629 184 0.3314
1007 1 24.0196 0.2317 G 1.077 104.0196 105 16.0422 51 8.058238983 96.58535406 79.4213 80 11.0569 184 0.2317
1008 1 14859.5947 143.3537 G 152.532 14940.5947 8629 15366.2021 182 15.22266674 97.95059029 82.1333 81 11.3004 124 143.3537
1009 1 350 3.3765 G 4.599 427 454 162.1893 92 10.82303238 92.84628102 77.1374 77 10.5642 188 3.3765
1010 1 1301.34 12.5543 G 15.0821 1377.34 1513 798.7948 102 11.39607143 91.32312493 75.4286 76 10.2154 188 12.5543
1011 1 98.3 0.9483 G 1.9052 174.3 175 34.9623 80 10.09253025 91.48801082 74.3516 76 10.3253 188 0.9483
1012 1 122.6667 1.1834 G 2.2224 195.6667 197 45.476 78 9.965575218 88.04479324 73.7418 73 10.0299 188 1.1834
1013 1 63.4533 0.6121 G 1.5531 137.4533 137 19.1097 75 9.772049904 88.50538796 74.3187 74 9.6703 188 0.6121
1014 1 32.7231 0.3157 G 1.2018 108.7231 107 14.8837 65 9.097283363 90.47050721 75.3571 76 9.647 188 0.3157
1015 1 15418.3398 148.744 G 165.8189 15495.3398 5798 16778.625 222 16.81247139 93.44736355 78.2124 77 10.9649 234 148.744
1016 1 37.6364 0.3631 G 1.2377 115.6364 112 14.6517 77 9.90148735 93.43071061 78.6167 78 10.2871 186 0.3631
1017 1 21.2941 0.2054 G 1.0706 97.2941 98 12.448 51 8.058238983 90.87801106 77.7624 76 9.9187 187 0.2054
1018 1 32.4557 0.3131 G 1.1787 107.4557 107 12.2586 79 10.02925301 91.16438426 75.9944 75 10.7763 186 0.3131
1019 1 25.8966 0.2498 G 1.1188 101.8966 101 13.0697 58 8.59348011 91.07890491 76.4125 76 10.0526 166 0.2498
1020 1 64.5802 0.623 G 1.4827 139.5802 140 19.3887 81 10.15541267 94.14039517 75.475 75 12.7603 166 0.623

Total number of rows: 54359

Table truncated, full table size 5871 Kbytes.




Supplementary file Size Download File type/resource
GSM82333.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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