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Sample GSM82346 Query DataSets for GSM82346
Status Public on Apr 30, 2007
Title 1246_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13949.0596 149.0082 G 146.2249 14027.0596 4797 15855.2119 205 16.15593147 95.92796241 79.2982 78 11.952 236 149.0082
1002 1 1097.1792 11.7204 G 12.3243 1178.1792 1272 619.1403 108 11.72646046 95.59769388 81.4396 81 9.7318 188 11.7204
1003 1 8.7879 0.0939 L 0.8858 92.7879 91 16.9612 99 11.22723103 104.7544674 85.9006 84 13.8363 167 0.0939
1004 1 15.2568 0.163 L 0.9941 97.2568 99 17.4952 74 9.706685066 97.8320117 83.0326 82 10.5547 94 0.163
1005 1 6.3103 0.0674 L 0.8464 85.3103 85 8.8595 29 6.076507568 100.7863545 82.3956 79 14.5242 188 0.0674
1006 1 17.9216 0.1914 G 1.0223 96.9216 97 12.4426 51 8.058238983 94.80496615 78.967 79 10.5366 188 0.1914
1007 1 16.3095 0.1742 G 1.01 96.3095 95 12.8739 42 7.312732697 95.3529496 79.3352 80 10.2353 188 0.1742
1008 1 15949.2773 170.3751 G 159.0629 16034.2773 7493 16951.6055 186 15.38903999 100.8046259 84.725 85 10.5364 124 170.3751
1009 1 449.1563 4.798 G 5.5462 529.1563 576 224.8121 96 11.05581284 95.40878047 80.3516 80 10.2725 188 4.798
1010 1 931.0408 9.9457 G 10.6093 1011.0408 1046 560.2442 100 11.28379154 95.29720946 79.8947 80 10.1981 158 9.9457
1011 1 78.7975 0.8417 G 1.6706 156.7975 153 33.2761 79 10.02925301 93.85452523 77.5659 78 10.5697 188 0.8417
1012 1 117.962 1.2601 G 2.1063 193.962 205 45.0944 79 10.02925301 92.08779051 78.0934 76 10.7252 188 1.2601
1013 1 40.8333 0.4362 G 1.269 119.8333 120 15.6941 72 9.574614525 94.43467981 78.4121 79 10.2898 188 0.4362
1014 1 85.1 0.9091 G 1.7196 162.1 162 30.9033 80 10.09253025 94.26790461 76.7967 77 11.5119 188 0.9091
1015 1 15673.8896 167.4334 G 159.7994 15754.8896 4787 17439.0938 231 17.14987946 98.59169294 82.3023 81 11.7278 223 167.4334
1016 1 30.3333 0.324 G 1.1044 113.3333 113 14.5203 81 10.15541267 102.6204427 83.5259 83 13.0803 120 0.324
1017 1 21.3966 0.2286 G 1.0737 97.3966 96 12.2657 58 8.59348011 90.71075323 78.2582 76 9.8072 188 0.2286
1018 1 14.6522 0.1565 L 0.9922 92.6522 91 17.5031 46 7.653039932 93.37870261 79.1154 78 10.2525 188 0.1565
1019 1 9.5283 0.1018 L 0.9333 87.5283 86 12.4864 53 8.214724541 93.78762762 78.9307 78 10.5251 105 0.1018
1020 1 26.2432 0.2803 L 0.9079 118.2432 115 22.9434 37 6.86366272 130.2319727 94.9866 92 25.488 155 0.2803

Total number of rows: 54359

Table truncated, full table size 5866 Kbytes.




Supplementary file Size Download File type/resource
GSM82346.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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