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Sample GSM82347 Query DataSets for GSM82347
Status Public on Apr 30, 2007
Title 1581_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 15257.8213 132.192 G 155.3956 15340.8213 7376 15849.7715 175 14.92705345 98.721089 83.0667 83 10.4807 124 132.192
1002 1 1577.8477 13.6703 G 15.5127 1659.8477 1827 887.8367 107 11.67204475 106.9993009 83.7314 82 16.6662 181 13.6703
1003 1 2.2159 0.0192 L 0.8155 86.2159 86 15.757 88 10.58513451 105.7272971 85.6012 84 14.4849 174 0.0192
1004 1 15.8878 0.1376 G 1.0095 92.8878 93 15.3635 100 11.28379154 92.01186426 78.1299 77 10.0079 183 0.1376
1005 1 9.9118 0.0859 L 0.9522 86.9118 86 13.4501 34 6.579524517 91.27858804 78.0341 77 9.5191 182 0.0859
1006 1 18.8 0.1629 G 1.0189 95.8 95 13.5799 55 8.368284225 94.02745396 78.5254 77 11.3516 183 0.1629
1007 1 30.254 0.2621 G 1.1383 110.254 109 16.5654 63 8.956232071 96.85528466 81.1278 80 11.2369 186 0.2621
1008 1 14171.5967 122.7811 G 138.9992 14255.5967 5206 15315.3691 183 15.26443005 102.5588237 84.8917 84 12.3725 124 122.7811
1009 1 693.2165 6.0059 G 7.9914 774.2165 874 367.2331 97 11.11324596 96.88096304 80.8846 81 10.5873 188 6.0059
1010 1 1801.8687 15.6112 G 20.7148 1878.8687 2108 1158.2841 101 11.34007072 90.7019112 77.2486 77 9.1346 183 15.6112
1011 1 89.8889 0.7788 G 1.7913 166.8889 169 29.2533 81 10.15541267 93.1643769 77.4615 77 10.7763 188 0.7788
1012 1 159.6265 1.383 G 2.5874 236.6265 253 73.8172 83 10.28002357 91.45485294 77.2857 77 9.6366 188 1.383
1013 1 47.5067 0.4116 G 1.3626 124.5067 125 16.0809 75 9.772049904 91.37760619 77.0055 77 9.5851 188 0.4116
1014 1 281.1224 2.4356 G 3.8493 358.1224 392 140.4359 98 11.17038345 93.03564606 77.9558 77 10.6904 187 2.4356
1015 1 15390.7656 133.3438 G 159.2028 15471.7656 5522 16947.5273 226 16.96325874 97.18275473 81.9583 81 10.7885 224 133.3438
1016 1 48.6456 0.4215 G 1.327 130.6456 129 17.9867 79 10.02925301 98.4535989 82.0578 82 10.9691 179 0.4215
1017 1 9.1685 0.0794 L 0.9198 90.1685 91 13.2972 89 10.64510822 98.03527211 82.4768 81 11.3568 157 0.0794
1018 1 8.9796 0.0778 L 0.9138 88.9796 87 14.3626 98 11.17038345 97.37136002 81.4725 80 11.5809 188 0.0778
1019 1 18.5 0.1603 L 0.9742 108.5 110 15.6506 52 8.136857986 111.3689022 91.3083 90 14.2459 124 0.1603
1020 1 68.6375 0.5947 G 1.3024 158.6375 155 23.4053 80 10.09253025 121.8003969 95.7794 90 21.2003 140 0.5947

Total number of rows: 54359

Table truncated, full table size 5880 Kbytes.




Supplementary file Size Download File type/resource
GSM82347.TXT.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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