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Sample GSM82362 Query DataSets for GSM82362
Status Public on Apr 30, 2007
Title 1584_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13573.4873 176.4318 G 142.0072 13651.4873 6259 14678.7793 156 14.0934515 96.13232778 79.5917 78 12.0882 124 176.4318
1002 1 791.6477 10.29 G 9.4613 867.6477 970 433.8766 88 10.58513451 91.70499844 77.9945 76 10.47 188 10.29
1003 1 -0.0392 -0.0005 L 0.8142 78.9608 80 12.7309 51 8.058238983 96.97643607 79.2917 79 11.9843 124 -0.0005
1004 1 22.0714 0.2869 G 1.0557 98.0714 100 14.4394 70 9.44069767 92.89816648 77.2185 76 11.2654 123 0.2869
1005 1 14.1667 0.1841 L 0.9796 91.1667 91 12.2961 36 6.770275116 93.06842639 77.1648 77 10.7123 188 0.1841
1006 1 22.5676 0.2933 G 1.0633 101.5676 102 11.4125 37 6.86366272 95.51752495 79.1381 79 11.0117 187 0.2933
1007 1 23.2667 0.3024 G 1.0643 101.2667 100 12.4032 45 7.569397449 95.14957876 79.0714 78 11.4331 188 0.3024
1008 1 14577.6143 189.4837 G 153.9752 14654.6143 5095 16017.8291 173 14.84151077 95.17517585 78.4833 77 12.1168 124 189.4837
1009 1 294.9425 3.8337 G 4.0002 372.9425 405 131.8636 87 10.52482033 93.23106599 77.6354 78 10.154 187 3.8337
1010 1 1039.7979 13.5156 G 12.0921 1116.7979 1279 602.0761 94 10.94004154 92.35759064 77.4121 77 10.2384 188 13.5156
1011 1 73.8312 0.9597 G 1.631 150.8312 155 29.7965 77 9.90148735 92.4767647 77.1209 77 10.3178 188 0.9597
1012 1 108.7059 1.413 G 2.0204 184.7059 191 39.4581 68 9.304853439 91.42140201 75.9835 76 10.2809 188 1.413
1013 1 36.7857 0.4782 G 1.2181 113.7857 113 12.3078 70 9.44069767 93.41519363 76.9011 77 10.9435 188 0.4782
1014 1 52.2254 0.6788 G 1.3998 129.2254 129 17.8682 71 9.507891655 92.31848857 77.1648 77 10.2123 188 0.6788
1015 1 12203.5313 158.6248 G 131.2768 12282.5313 3155 14404.5273 164 14.45030403 93.56205733 79.3513 79 9.708 115 158.6248
1016 1 87.9437 1.1431 G 1.8483 161.9437 173 39.9897 71 9.507891655 87.61768692 74.3262 74 9.0785 145 1.1431
1017 1 21.2093 0.2757 G 1.0962 96.2093 99 10.1192 43 7.39927721 87.76715199 75 75 8.5114 177 0.2757
1018 1 6.0337 0.0784 L 0.9048 83.0337 83 12.1447 89 10.64510822 91.7720165 76.7171 77 9.848 213 0.0784
1019 1 -0.1509 -0.002 L 0.8433 79.8491 80 11.7126 53 8.214724541 94.68782959 78.7611 80 9.7919 117 -0.002
1020 1 30.4 0.3951 G 1.1624 106.4 108 14.6438 50 7.978845596 91.5363429 77.1444 76 10.3576 186 0.3951

Total number of rows: 54359

Table truncated, full table size 5814 Kbytes.




Supplementary file Size Download File type/resource
GSM82362.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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