NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM82369 Query DataSets for GSM82369
Status Public on Apr 30, 2007
Title 1587_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 12672.3418 169.3636 G 129.1191 12752.3418 4248 14005.5313 169 14.6689291 98.76418211 81.2833 80 12.5095 124 169.3636
1002 1 954.4584 12.7562 G 11.6698 1027.4584 1241 579.1599 96 11.05581284 88.0442807 73.037 73 10.0295 168 12.7562
1003 1 -1.0333 -0.0138 L 0.8157 73.9667 72 11.993 30 6.18038702 90.67795547 75.7584 75 10.452 155 -0.0138
1004 1 11.1778 0.1494 L 0.9623 85.1778 82 13.1323 90 10.70474434 88.51688181 75.0132 74 9.6779 236 0.1494
1005 1 12.4474 0.1664 L 0.977 85.4474 89 11.3084 38 6.955796242 87.4581358 73.5604 73 9.6388 188 0.1664
1006 1 15.2432 0.2037 G 1.0072 91.2432 93 12.2019 37 6.86366272 90.59144607 75.5879 76 9.7276 188 0.2037
1007 1 12.2951 0.1643 L 0.9527 86.2951 85 12.4048 61 8.812923431 90.58093538 73.9583 74 11.054 124 0.1643
1008 1 14071.6758 188.0654 G 147.588 14148.6758 6392 15136.873 184 15.30607986 95.86603265 80.0417 77 12.5774 124 188.0654
1009 1 271.2584 3.6253 G 3.8489 346.2584 373 116.7064 89 10.64510822 89.96348394 76.4945 75 9.9757 188 3.6253
1010 1 725.7065 9.6989 G 8.9648 799.7065 929 404.9879 92 10.82303238 89.20557365 75.4176 74 10.137 188 9.6989
1011 1 79.1795 1.0582 G 1.7548 153.1795 157 29.6954 78 9.965575218 87.29226728 74.7348 74 8.8615 187 1.0582
1012 1 63.3425 0.8466 G 1.5428 138.3425 140 24.1214 73 9.640875816 89.66896957 75.8626 75 9.7793 188 0.8466
1013 1 47.8493 0.6395 G 1.3864 121.8493 123 19.1173 73 9.640875816 87.88635013 75.2473 74 9.2576 188 0.6395
1014 1 28.38 0.3793 G 1.1419 102.38 102 10.1289 50 7.978845596 89.65751539 75.0495 74 10.4383 188 0.3793
1015 1 13666.6953 182.6529 G 143.5957 13745.6953 7614 14320.1006 143 13.49345207 95.72496637 80.0879 79 11.15 188 182.6529
1016 1 34.3704 0.4594 G 1.2216 110.3704 108 16.1936 54 8.291859627 90.35148963 76.2308 76 9.5677 188 0.4594
1017 1 15.0455 0.2011 L 0.9965 90.0455 94 13.2046 44 7.484820843 90.36253132 74.7473 75 10.2417 188 0.2011
1018 1 27 0.3609 G 1.1452 101 99 13.8527 59 8.667244911 88.197763 74.3901 74 9.4652 188 0.3609
1019 1 7 0.0936 L 0.9267 83 85 11.2146 86 10.46415806 89.56273905 76.702 76 9.0418 206 0.0936
1020 1 24.2679 0.3243 G 1.1106 101.2679 101 12.3426 56 8.444016457 91.17981864 76.7907 77 9.4532 178 0.3243

Total number of rows: 54359

Table truncated, full table size 5825 Kbytes.




Supplementary file Size Download File type/resource
GSM82369.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap