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Sample GSM82370 Query DataSets for GSM82370
Status Public on Apr 30, 2007
Title 1687_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13637.0488 199.678 G 145.1454 13713.0488 3946 15867.334 165 14.49429321 94.47802118 77.9083 76 12.3187 124 199.678
1002 1 1152.6459 16.8774 G 13.6155 1226.6459 1403 711.626 96 11.05581284 90.09189359 73.895 74 10.7279 187 16.8774
1003 1 2.1667 0.0317 L 0.8622 77.1667 77 11.8465 30 6.18038702 89.4996128 75.3687 75 9.6664 185 0.0317
1004 1 7.9333 0.1162 L 0.9421 83.9333 84 14.6366 60 8.740387917 89.09001715 75.3917 76 8.7267 124 0.1162
1005 1 15.0909 0.221 L 0.9995 87.0909 89 12.109 33 6.482044697 87.13826415 72.5495 72 10.0922 188 0.221
1006 1 17.8571 0.2615 G 1.0256 91.8571 93 13.0796 42 7.312732697 89.56291291 73.8132 74 10.3753 188 0.2615
1007 1 13.1219 0.1921 L 0.9833 86.1219 87 13.5362 41 7.225152016 87.58328661 72.8681 73 9.7222 188 0.1921
1008 1 14180.9775 207.6424 G 150.3211 14258.9775 3790 16300.3926 179 15.09668446 94.85681861 77.2917 78 11.2379 124 207.6424
1009 1 361.4839 5.293 G 4.9494 434.4839 464 169.3795 93 10.88169479 87.78454056 72.9231 73 9.8564 188 5.293
1010 1 815.7363 11.9443 G 9.9908 889.7363 1040 452.6793 91 10.76405144 89.05553318 73.8956 74 10.037 188 11.9443
1011 1 88.7821 1.3 G 1.8474 162.7821 167 32.4522 78 9.965575218 88.11491945 74.7088 74 9.4099 188 1.3
1012 1 73.473 1.0758 G 1.6984 146.473 149 29.8647 74 9.706685066 86.23937542 73.1429 73 8.8262 188 1.0758
1013 1 49.1408 0.7195 G 1.3906 123.1408 124 15.9703 71 9.507891655 88.55424321 73.7473 74 9.7028 188 0.7195
1014 1 19.9231 0.2917 G 1.058 92.9231 91 11.9612 52 8.136857986 87.82647772 73.8791 73 9.8843 188 0.2917
1015 1 13828.4453 202.4805 G 146.0614 13904.4453 5487 15890.7002 148 13.72732544 95.19586164 76.675 76 12.7972 124 202.4805
1016 1 50.3438 0.7371 G 1.4045 124.3438 122 19.4569 64 9.027033806 88.53419887 74.9341 74 9.6895 188 0.7371
1017 1 17.3902 0.2546 G 1.0337 91.3902 94 10.8085 41 7.225152016 88.40877158 73.0892 74 9.6058 163 0.2546
1018 1 6.1429 0.0899 L 0.9042 79.1429 80 11.8401 91 10.76405144 87.52960354 71.7178 73 9.6864 210 0.0899
1019 1 14.4242 0.2112 L 0.979 84.4242 86 13.3735 33 6.482044697 86.23147477 70.8807 70 10.821 182 0.2112
1020 1 24.2174 0.3546 G 1.104 96.2174 97 13.5645 46 7.653039932 87.15209122 73.0278 72 10.1014 186 0.3546

Total number of rows: 54359

Table truncated, full table size 5816 Kbytes.




Supplementary file Size Download File type/resource
GSM82370.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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