NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM82374 Query DataSets for GSM82374
Status Public on Apr 30, 2007
Title 1990_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 15104.2813 158.6058 G 165.5736 15182.2813 4834 16817.3105 148 13.72732544 91.69507263 78.225 78 9.13 124 158.6058
1002 1 768.7816 8.0728 G 9.2805 845.7816 980 486.627 87 10.52482033 91.13522426 77.7033 77 9.4235 188 8.0728
1003 1 8.0606 0.0846 L 0.9151 88.0606 89 13.7421 33 6.482044697 96.22742787 81.4231 80 10.8183 188 0.0846
1004 1 11.9655 0.1256 L 0.9529 91.9655 91 12.6586 29 6.076507568 96.50905606 80.3149 80 11.006 187 0.1256
1005 1 16.0541 0.1686 G 1.0188 92.0541 92 11.6896 37 6.86366272 90.352961 76.5989 76 9.5686 188 0.1686
1006 1 29.7333 0.3122 G 1.1848 105.7333 106 12.7913 45 7.569397449 89.24439865 75.8352 76 8.8296 188 0.3122
1007 1 38.193 0.4011 G 1.2598 116.193 115 14.2058 57 8.519076347 92.23021601 78.3743 78 9.4868 185 0.4011
1008 1 16164.5059 169.7389 G 172.9426 16242.5059 5905 17464.6621 162 14.36192226 93.91849701 79.1917 78 10.6123 124 169.7389
1009 1 436.5233 4.5838 G 5.2429 517.5233 565 196.2655 86 10.46415806 98.70969376 80.9451 81 11.8065 188 4.5838
1010 1 383.6667 4.0288 G 5.0369 458.6667 550 228.8644 87 10.52482033 91.06218606 77.5604 75 10.7081 188 4.0288
1011 1 78.2195 0.8214 G 1.6789 156.2195 159 31.7413 82 10.21790791 93.04866383 79.5086 78 10.0324 181 0.8214
1012 1 43.7538 0.4594 G 1.3111 119.7538 117 19.7048 65 9.097283363 91.33560373 77.3956 76 10.2237 188 0.4594
1013 1 25.1463 0.2641 G 1.0166 105.1463 105 13.9713 41 7.225152016 103.4272026 83.9505 80 15.6181 188 0.2641
1014 1 17.4419 0.1832 G 1.0409 99.4419 99 14.2507 43 7.39927721 95.53273116 82.2912 82 9.0218 188 0.1832
1015 1 15890.6719 166.8635 G 156.6276 15973.6719 7913 17091.002 130 12.86550236 101.9850229 83.7418 83 12.6567 188 166.8635
1016 1 125.4444 1.3173 G 2.167 205.4444 213 75.0294 72 9.574614525 94.8060284 80.3681 80 9.8707 188 1.3173
1017 1 32.8421 0.3449 G 1.2177 110.8421 110 15.0505 57 8.519076347 91.02223225 78.3591 78 8.6815 187 0.3449
1018 1 4.1176 0.0432 L 0.8755 83.1176 82 10.952 51 8.058238983 94.93456942 78.7119 79 10.623 122 0.0432
1019 1 -1.4643 -0.0154 L 0.8315 80.5357 79 14.0661 56 8.444016457 96.85550222 80.9091 82 9.9037 79 -0.0154
1020 1 33.4118 0.3508 G 1.1996 113.4118 113 13.4225 51 8.058238983 94.5440543 79.8407 80 9.696 188 0.3508

Total number of rows: 54359

Table truncated, full table size 5813 Kbytes.




Supplementary file Size Download File type/resource
GSM82374.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap