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Sample GSM825583 Query DataSets for GSM825583
Status Public on Apr 21, 2012
Title Liver_ZT13_Control_3
Sample type RNA
 
Source name Liver
Organism Mus musculus
Characteristics gender: Male
strain: Bl6J
age: 10-12 weeks
tissue: Liver
treatment: control
time point: 13
Treatment protocol SR mice were kept awake using 'gentle handing' method from ZT0 until ZT6 for 5 consecutive days, left to sleep ad libitum for 2 days, and sleep restrictiong was repeated for another 5 days. Control mice were kepts undisturbed in parallel.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol Reagent (Invitrogen)
Label biotin
Label protocol Labelling was with GeneChip WT Terminal Labeling Kit (Affymetrix)
 
Hybridization protocol 17 hours, 60 rpm, 45C
Scan protocol GeneChip Scanner 3000
Description Liver_Probe45_(MoGene-1_0-st-v1).CEL
Data processing Data was extracted from CEL files using dChip. Values are MM/PM normalized signal estimates from dChip software.
 
Submission date Nov 01, 2011
Last update date Apr 21, 2012
Contact name Johanna Barclay
E-mail(s) jbarcla@gwdg.de
Organization name MPI-BPC
Street address Am Fassburg 11
City Göttingen
ZIP/Postal code 37077
Country Germany
 
Platform ID GPL6246
Series (1)
GSE33381 The effect of sleep restriction on transcriptome rhythmicity in mice

Data table header descriptions
ID_REF
VALUE dCHIP signal
p value

Data table
ID_REF VALUE p value
10371959 156.53 0.0069
10386207 45.57 0.0076
10389522 1179.63 0.0000
10445141 21.42 0.0100
10468089 403.06 0.0283
10490294 2006.89 0.0000
10563110 45.35 0.0000
10347748 472.66 0.0063
10354542 196.91 0.0614
10366848 960 0.0159
10370708 462 0.0793
10386992 15.27 0.1008
10394527 96.8 0.0034
10402195 96.13 0.0225
10405785 204.47 0.0534
10406364 99.82 0.0291
10419779 128.27 0.0220
10440593 89.06 0.0050
10474335 161.54 0.1310
10487622 303.56 0.0134

Total number of rows: 28815

Table truncated, full table size 630 Kbytes.




Supplementary file Size Download File type/resource
GSM825583.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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