NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM825584 Query DataSets for GSM825584
Status Public on Apr 21, 2012
Title Liver_ZT19_Control_1
Sample type RNA
 
Source name Liver
Organism Mus musculus
Characteristics gender: Male
strain: Bl6J
age: 10-12 weeks
tissue: Liver
treatment: control
time point: 19
Treatment protocol SR mice were kept awake using 'gentle handing' method from ZT0 until ZT6 for 5 consecutive days, left to sleep ad libitum for 2 days, and sleep restrictiong was repeated for another 5 days. Control mice were kepts undisturbed in parallel.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol Reagent (Invitrogen)
Label biotin
Label protocol Labelling was with GeneChip WT Terminal Labeling Kit (Affymetrix)
 
Hybridization protocol 17 hours, 60 rpm, 45C
Scan protocol GeneChip Scanner 3000
Description Liver_Probe46_(MoGene-1_0-st-v1).CEL
Data processing Data was extracted from CEL files using dChip. Values are MM/PM normalized signal estimates from dChip software.
 
Submission date Nov 01, 2011
Last update date Apr 21, 2012
Contact name Johanna Barclay
E-mail(s) jbarcla@gwdg.de
Organization name MPI-BPC
Street address Am Fassburg 11
City Göttingen
ZIP/Postal code 37077
Country Germany
 
Platform ID GPL6246
Series (1)
GSE33381 The effect of sleep restriction on transcriptome rhythmicity in mice

Data table header descriptions
ID_REF
VALUE dCHIP signal
p value

Data table
ID_REF VALUE p value
10371959 178.66 0.0225
10386207 53.21 0.0060
10389522 1136.97 0.0000
10445141 25.27 0.0048
10468089 483.19 0.0223
10490294 1916.26 0.0000
10563110 39.71 0.0000
10347748 705.85 0.0093
10354542 301.33 0.0478
10366848 692.14 0.0519
10370708 273.73 0.0743
10386992 21.65 0.0278
10394527 72.14 0.0383
10402195 86.98 0.0623
10405785 233.99 0.0350
10406364 63.3 0.0556
10419779 104.74 0.1022
10440593 87.64 0.0215
10474335 104.68 0.0151
10487622 232.4 0.0407

Total number of rows: 28815

Table truncated, full table size 631 Kbytes.




Supplementary file Size Download File type/resource
GSM825584.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap