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Sample GSM842 Query DataSets for GSM842
Status Public on Feb 12, 2002
Title YPD 2 h (25C)
Sample type RNA
 
Channel 1
Source name t=0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2 h
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a72
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 125 100 1181 1193 1152 62 41 31 874 905 .777 0 -.434 .904 96 83 1.025 1.351 .975 .74 .994 1142 177 109 124 110 125 -.434
2 175 90 936 1217 1174 180 43 33 891 923 .856 0 -.072 .997 69 64 .797 1.051 1.254 .952 1.113 928 177 109 124 127 142 -.072
3 139 61 14 59 21 198 38 29 16 45 .729 -100 1.089 23 28 .667 .879 1.5 1.138 .625 950 177 109 124 145 160 .186
4 78 52 468 583 549 86 34 26 416 442 .771 0 -.168 1.091 47 54 .852 1.124 1.173 .89 .905 928 177 109 124 163 178 -.168
5 74 54 2702 3683 3647 83 36 27 2767 2794 0 0 .034 1.347 87 86 .741 .977 1.35 1.024 0 928 177 109 124 180 195 .034
6 81 57 408 545 509 92 36 27 386 413 .807 0 -.079 1.212 42 48 .802 1.057 1.248 .946 .97 941 177 109 124 198 213 -.079
7 69 54 5 37 5 58 32 24 4 28 -.016 -100 .75 23 28 1 1.318 1 .759 -.01 928 177 109 124 216 231 -.399
8 68 51 8 34 4 56 30 23 3 26 .245 -100 .553 29 27 2 2.636 .5 .379 .147 928 177 109 124 233 248 -1.399
9 64 51 6 28 48 29 22 -1 21 .084 -100 .618 28 22 .049 905 177 109 124 251 266
10 119 52 4 32 4 179 28 21 3 24 .115 -100 .69 24 27 1 1.318 1 .759 .069 896 177 109 124 268 283 -.399
11 131 52 1 30 205 30 23 0 23 .171 -100 .654 19 19 .111 909 177 109 124 286 301
12 142 55 30 201 31 24 -1 23 .037 -100 .474 25 18 .023 896 177 109 124 304 319
13 145 57 33 3 203 30 23 2 25 .003 -100 .729 16 24 .002 906 177 109 124 321 336
14 81 54 6 29 2 78 27 20 2 22 .012 -100 .361 23 23 3 3.955 .333 .253 .006 896 177 109 124 339 354 -1.984
15 74 50 169 159 132 86 27 20 100 121 .958 0 -.755 .682 33 32 1.28 1.688 .781 .593 .721 928 177 108 123 356 371 -.755
16 74 50 7 26 85 27 20 -1 20 -.087 -100 .649 27 23 -.046 950 177 108 123 374 389
17 59 50 9 31 4 39 27 20 3 24 .267 -100 .641 30 22 2.25 2.966 .444 .337 .264 928 177 108 123 392 407 -1.568
18 59 49 9 28 3 38 25 19 2 21 .054 -100 .4 28 24 3 3.955 .333 .253 .025 928 177 108 123 409 424 -1.984
19 62 47 8 26 46 27 20 -1 20 -.128 -100 .455 27 18 -.066 941 177 108 123 427 442
20 61 48 9 30 3 60 27 20 2 23 -.005 -100 .414 29 27 3 3.955 .333 .253 -.003 928 177 108 123 445 460 -1.984

Total number of rows: 9216

Table truncated, full table size 1087 Kbytes.




Supplementary data files not provided
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