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Sample GSM857169 Query DataSets for GSM857169
Status Public on Jan 03, 2015
Title Blood 13
Sample type genomic
 
Source name Blood
Organism Homo sapiens
Characteristics gender: Female
tissue: Blood
Extracted molecule genomic DNA
Extraction protocol Genomic DNA from tumor tissues and blood was isolated using QIAamp DNA Mini Kit (QIAGEN Inc.).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Sample name: B13
Genomic DNA extracted from blood was genotyped using Sentrix HumanCNV370-Quadv3-0 BeadChip (Illumina).
Data processing The data was processed by Illumina GenomeStudio software and SNP cluster algorithm.
 
Submission date Jan 05, 2012
Last update date Jan 03, 2015
Contact name Dapeng Wang
Organization name Beijing Institute of Genomics
Street address No.7 Beitucheng West Road, Chaoyang District, Beijing 100029, PR China
City Beijing
ZIP/Postal code 100029
Country China
 
Platform ID GPL6985
Series (1)
GSE34888 Genomic aberrations of high-grade and low-grade gliomas from Chinese patients

Data table header descriptions
ID_REF
VALUE Genotype call
B13.Score
B13.Theta
B13.R
B13.B Allele Freq
B13.Log R Ratio

Data table
ID_REF VALUE B13.Score B13.Theta B13.R B13.B Allele Freq B13.Log R Ratio
cnvi0000036-126_T_F_1514265414 NC 0 0.9850931 0.7826358 0.993625 0.07556614
cnvi0000037-126_T_F_1514265415 NC 0 0.02156168 0.8908667 0 -0.1358471
cnvi0000053-126_T_F_1514265423 NC 0 0.01196939 1.279986 0 -0.05253704
cnvi0000054-126_B_F_1514230418 NC 0 0.1027775 0.9528584 0.01210129 -0.08719589
cnvi0000055-126_B_F_1514230419 NC 0 0.9654545 0.9183382 0.99739 0.08824752
cnvi0000068-126_T_F_1514230423 NC 0 0.05318992 1.140288 0.01228655 -0.1799398
cnvi0000078-126_B_F_1514265437 NC 0 0.02854317 1.045254 0 -0.04812481
cnvi0000079-126_B_F_1514230430 NC 0 0.01487576 0.8497327 0 -0.1310971
cnvi0000080-126_B_R_1514265438 NC 0 0.9902756 1.181611 0.9987212 -0.1115934
cnvi0000092-126_B_F_1514265442 NC 0 0.9367522 1.111304 0.9960685 0.1051137
cnvi0000093-126_T_F_1514230436 NC 0 0.025111 1.783027 0.002759482 -0.1599518
cnvi0000105-126_T_F_1514265450 NC 0 0.9633107 1.409867 0.9857913 -0.09791052
cnvi0000120-126_T_F_1514230445 NC 0 0.9737874 1.451359 0.9954394 -0.147696
cnvi0000132-126_B_F_1514265467 NC 0 0.9941739 1.411841 1 -0.1377217
cnvi0000150-126_T_R_1514230456 NC 0 0.9592614 1.106159 1 -0.002803632
cnvi0000151-126_B_F_1514265481 NC 0 0.9104404 0.7118438 0.987223 -0.04978649
cnvi0000152-126_T_F_1514265482 NC 0 0.8812734 0.8949588 0.9853753 0.05133442
cnvi0000169-126_T_F_1514230467 NC 0 0.005946759 0.9504645 0 0.1009153
cnvi0000175-126_T_F_1514230472 NC 0 0.940356 1.061028 0.9909542 -0.03693972
cnvi0000186-126_T_F_1514230477 NC 0 0.04669003 1.90597 0.001821358 -0.07678769

Total number of rows: 356191

Table truncated, full table size 27416 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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