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Sample GSM860491 Query DataSets for GSM860491
Status Public on Jul 01, 2014
Title Blood Control individualHFS146
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics age (years): 6
clinical status: C
severity score: 0
Sex: M
hb phenotype: AS
white blood cells: 5.4
mean corpuscular volume: 80.2
red blood cells: 4.8
genotypic pc1: 0.0537
genotypic pc2: -0.059
Extracted molecule total RNA
Extraction protocol RNA was extracted from whole blood collected in Tempus tubes using the Tempus Spin RNA Isolation kit (Applied Biosystems). Total RNA was then globin-mRNA-depleted using GlobinClear kit (Ambion). Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample285
globin mRNA-depleted total RNA
Data processing The data was log2 transfromed and normalised using quantile normalisation with JMP Genomics
 
Submission date Jan 11, 2012
Last update date Jul 01, 2014
Contact name Jacklyn Quinlan
E-mail(s) jacki.quinlan@gmail.com
Phone 514-345-4931
Organization name CHU Ste-Justine Hospital
Department Pediatrics
Lab Philip Awadalla
Street address 3175 Cote Ste-Catherine
City Montreal
State/province Qc
ZIP/Postal code H3T 1C5
Country Canada
 
Platform ID GPL10558
Series (1)
GSE35007 The genomic architecture of sickle cell disease in children from West Africa

Data table header descriptions
ID_REF
VALUE quantile normalized signal
HFS146Detection Pval

Data table
ID_REF VALUE HFS146Detection Pval
ILMN_1762337 6.86007756 0.3805195
ILMN_2055271 7.15818243 0.03376623
ILMN_1736007 6.67582847 0.7025974
ILMN_2383229 6.68978518 0.6831169
ILMN_1806310 6.56153248 0.8506494
ILMN_1779670 6.55409113 0.8571429
ILMN_1653355 6.83595817 0.4350649
ILMN_1717783 6.63074142 0.774026
ILMN_1705025 6.70566139 0.6532468
ILMN_1814316 6.81324541 0.4857143
ILMN_2359168 6.50450083 0.9012987
ILMN_1731507 6.45667385 0.9402598
ILMN_1787689 6.93387146 0.2428571
ILMN_3241953 7.67065 0
ILMN_1745607 6.58280202 0.8272727
ILMN_2136495 6.4195218 0.9649351
ILMN_1668111 6.82233731 0.4662338
ILMN_2295559 6.89842774 0.3025974
ILMN_1735045 6.89547339 0.312987
ILMN_1680754 7.13530963 0.04025974

Total number of rows: 47323

Table truncated, full table size 1476 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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