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Sample GSM881508 Query DataSets for GSM881508
Status Public on Feb 04, 2023
Title sp p18
Sample type RNA
 
Source name SP
Organism Homo sapiens
Characteristics stem-like: yes
lmp2a: no
cell line: HK1
Growth protocol HK1 were maintained in RPMI 1640 medium supplemented with 10% fetal calf serum (FCS) while C666-1 in fibronectin coated plate in RPMI 1640 medium supplemented with 15% FCS. For sphere-forming assay, C666-1 cells were seeded at 5000 cells/ well in 6-well low attachment plate in serum-free DMEM/F12 (1:1) media supplemented with 5ug/ml Insulin-Transferrin-Selenium-A, 20ng/ml rEGF, 10ng/ml bFGF, 0.4% BSA, 1xB-27 supplement. All cell lines were maintained in 50U/ml penicillin and 50 µg/ml streptomycin at 37°C in a humidified atmosphere of 5% CO2.
Extracted molecule total RNA
Extraction protocol All RNA samples were extracted by Trizol.
Label biotin
Label protocol 1ug RNA from each sample was labeled according to manufacturer's protocol.
 
Hybridization protocol All RNA samples were hybridized according to manufacturer's protocol.
Scan protocol GeneChip Scanner 3000 7G.
Description Gene expression of NPC stem-like cells.
Data processing GeneChip Command Console software version 3.0.1.
 
Submission date Feb 28, 2012
Last update date Feb 04, 2023
Contact name Lu Ping Tan
E-mail(s) luping@imr.gov.my
Organization name Institute for Medical Research
Department Molecular Pathology Unit
Street address Jalan Pahang
City Kuala Lumpur
ZIP/Postal code 50588
Country Malaysia
 
Platform ID GPL6244
Series (2)
GSE36125 NPC stem-like cells [Affymetrix]
GSE36126 NPC stem-like cells

Data table header descriptions
ID_REF
VALUE Signal values were first transformed to the log base 2 and then normalization was carried out with RMA

Data table
ID_REF VALUE
7896736 5.33115
7896738 4.548553
7896740 4.579805
7896742 5.36921
7896744 4.904721
7896746 9.058901
7896748 10.178197
7896750 6.9815326
7896752 9.745955
7896754 6.085529
7896756 5.18842
7896759 5.3710775
7896761 6.3741984
7896779 6.177226
7896798 6.142941
7896817 6.140966
7896822 7.3754535
7896859 5.787797
7896861 4.6865973
7896863 5.551099

Total number of rows: 28869

Table truncated, full table size 491 Kbytes.




Supplementary file Size Download File type/resource
GSM881508_sp_p18_HuGene-1_0-st-v1_.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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