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Sample GSM881509 Query DataSets for GSM881509
Status Public on Feb 04, 2023
Title sp p29
Sample type RNA
 
Source name SP
Organism Homo sapiens
Characteristics stem-like: yes
lmp2a: no
cell line: HK1
Growth protocol HK1 were maintained in RPMI 1640 medium supplemented with 10% fetal calf serum (FCS) while C666-1 in fibronectin coated plate in RPMI 1640 medium supplemented with 15% FCS. For sphere-forming assay, C666-1 cells were seeded at 5000 cells/ well in 6-well low attachment plate in serum-free DMEM/F12 (1:1) media supplemented with 5ug/ml Insulin-Transferrin-Selenium-A, 20ng/ml rEGF, 10ng/ml bFGF, 0.4% BSA, 1xB-27 supplement. All cell lines were maintained in 50U/ml penicillin and 50 µg/ml streptomycin at 37°C in a humidified atmosphere of 5% CO2.
Extracted molecule total RNA
Extraction protocol All RNA samples were extracted by Trizol.
Label biotin
Label protocol 1ug RNA from each sample was labeled according to manufacturer's protocol.
 
Hybridization protocol All RNA samples were hybridized according to manufacturer's protocol.
Scan protocol GeneChip Scanner 3000 7G.
Description Gene expression of NPC stem-like cells.
Data processing GeneChip Command Console software version 3.0.1.
 
Submission date Feb 28, 2012
Last update date Feb 04, 2023
Contact name Lu Ping Tan
E-mail(s) luping@imr.gov.my
Organization name Institute for Medical Research
Department Molecular Pathology Unit
Street address Jalan Pahang
City Kuala Lumpur
ZIP/Postal code 50588
Country Malaysia
 
Platform ID GPL6244
Series (2)
GSE36125 NPC stem-like cells [Affymetrix]
GSE36126 NPC stem-like cells

Data table header descriptions
ID_REF
VALUE Signal values were first transformed to the log base 2 and then normalization was carried out with RMA

Data table
ID_REF VALUE
7896736 4.723448
7896738 4.60823
7896740 4.650729
7896742 5.786664
7896744 4.8487587
7896746 8.971609
7896748 10.131626
7896750 6.925366
7896752 9.7751
7896754 5.779854
7896756 5.0255375
7896759 5.6569557
7896761 6.190233
7896779 6.251024
7896798 5.8514247
7896817 6.253254
7896822 7.299282
7896859 5.6607604
7896861 4.711429
7896863 5.5414195

Total number of rows: 28869

Table truncated, full table size 491 Kbytes.




Supplementary file Size Download File type/resource
GSM881509_sp_p29_HuGene-1_0-st-v1_.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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