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Sample GSM888 Query DataSets for GSM888
Status Public on Feb 12, 2002
Title diauxic shift timecourse: 0 hr
Sample type RNA
 
Channel 1
Source name 0.14 OD 19g/L glucose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 0.14 OD 19g/L glucose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf1
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL57
Series (1)
GSE28 Diauxic shift

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 2720 2608 7075 8925 7613 1424 1312 1367 7930 9297 0 0 .165 1.09 27 36 .929 .892 1.076 1.121 0 1254 80 21 31 50 60 .165
2 2687 2600 7768 9300 7996 1381 1304 1358 8330 9688 0 0 .101 .986 31 36 .971 .933 1.029 1.072 0 1074 80 21 31 61 71 .101
3 2630 2584 4575 6168 4872 1327 1296 1350 5075 6425 0 0 .15 1.047 27 31 .939 .901 1.065 1.109 0 1030 80 21 31 72 82 .15
4 2629 2568 64 1315 27 1340 1288 1342 28 1370 .151 0 -1.193 1 0 0 2.37 2.286 .422 .438 .144 1030 80 21 31 83 93 -1.193
5 2639 2568 662 1668 380 1345 1288 1342 396 1738 .927 0 -.741 .605 17 18 1.742 1.672 .574 .598 .598 1030 80 21 31 94 104 -.741
6 2628 2576 481 1650 362 1334 1288 1342 377 1719 .914 0 -.351 .818 7 11 1.329 1.276 .753 .784 .637 1030 80 21 31 105 115 -.351
7 2605 2560 11479 14597 13309 1328 1288 1342 13863 15205 0 0 .272 1.121 36 42 .862 .828 1.159 1.208 0 1053 80 21 31 116 126 .272
8 2571 2544 806 1986 706 1296 1280 1333 736 2069 .853 0 -.131 .942 17 22 1.142 1.095 .876 .913 .801 1053 80 21 31 127 137 -.131
9 2554 2536 1220 1292 1272 1325 1271 .254 0 2 0 0 .202 1048 80 21 31 139 149
10 2540 2512 1211 1291 1264 1317 1261 .054 0 1.895 0 0 .041 1048 80 21 31 150 160
11 2551 2512 1200 1295 1264 1317 1250 .062 0 .333 0 0 .046 1030 80 21 31 161 171
12 2557 2512 8 1292 28 1290 1264 1317 29 1346 .617 0 1.858 .965 0 1 .286 .276 3.5 3.625 .614 1030 80 21 31 172 182 1.858
13 2563 2512 7354 9508 8244 1297 1264 1317 8587 9904 0 0 .224 1.137 41 51 .892 .856 1.121 1.168 0 1030 80 21 31 183 193 .224
14 2542 2496 4178 5281 4017 1287 1264 1317 4184 5501 0 0 .002 .944 36 41 1.04 .999 .961 1.001 0 1030 80 21 31 194 204 .002
15 2498 2472 806 1624 368 1272 1256 1308 384 1692 .917 0 -1.07 .492 32 28 2.19 2.099 .457 .476 .529 1030 80 21 31 205 215 -1.07
16 2477 2456 2580 3884 2636 1265 1248 1300 2746 4046 .95 0 .09 1.072 33 37 .979 .94 1.022 1.064 .917 1053 80 21 31 216 226 .09
17 2448 2440 1935 3031 1799 1246 1232 1283 1874 3157 .948 0 -.046 .924 31 37 1.076 1.033 .93 .968 .911 1053 80 21 31 227 237 -.046
18 2444 2432 1988 3351 2135 1238 1216 1267 2224 3491 .96 0 .162 .925 36 38 .931 .894 1.074 1.119 1.087 1048 80 21 31 239 249 .162
19 2439 2416 2538 3622 2414 1230 1208 1258 2515 3773 .929 0 -.013 .926 32 35 1.051 1.009 .951 .991 .881 1048 80 21 31 250 260 -.013
20 2429 2416 1360 2194 986 1220 1208 1258 1027 2285 .931 0 -.405 .642 32 36 1.379 1.324 .725 .755 .746 1030 80 21 31 261 271 -.405

Total number of rows: 6400

Table truncated, full table size 817 Kbytes.




Supplementary data files not provided
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