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Sample GSM890 Query DataSets for GSM890
Status Public on Feb 12, 2002
Title diauxic shift timecourse: 9.5 hr
Sample type RNA
 
Channel 1
Source name 0.14 OD 19.0g/L glucose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 0.46 OD 18.7g/L glucose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.41 scanning software was used.
Keywords = Starvation
Keywords = Diauxic shift
Lot batch = diauxicf2
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL57
Series (1)
GSE28 Diauxic shift

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 2459 2296 3769 5075 3595 1697 1480 1873 4551 6424 0 0 .272 .919 27 30 1.048 .828 .954 1.207 0 1148 80 13 23 71 81 .272
2 2494 2336 4255 5513 3961 1773 1552 1965 5013 6978 0 0 .237 .825 32 37 1.074 .849 .931 1.178 0 958 80 13 23 82 92 .237
3 2545 2376 2909 4797 3181 1822 1616 2046 4026 6072 0 0 .469 .9 30 28 .914 .723 1.094 1.384 0 911 80 13 23 93 103 .469
4 2576 2416 68 1625 1870 1656 2096 2057 .289 0 .905 0 0 .262 911 80 13 23 104 114
5 2516 2456 447 2117 413 1729 1704 2157 523 2680 .799 0 .227 .875 13 18 1.082 .855 .924 1.17 1.186 911 80 13 23 115 125 .227
6 2602 2520 470 2259 499 1812 1760 2228 631 2859 .696 0 .425 .465 7 10 .942 .745 1.062 1.343 1.193 911 80 13 23 126 136 .425
7 2685 2584 17475 26265 24457 1908 1808 2289 30958 33247 0 0 .825 1.742 45 53 .715 .564 1.4 1.772 0 935 80 13 23 137 147 .825
8 2712 2608 1270 5097 3257 1947 1840 2329 4123 6452 4.538 0 1.699 2.555 20 31 .39 .308 2.565 3.246 2.204 935 80 13 23 148 158 1.699
9 2740 2632 1686 1996 1872 2370 2134 .244 0 .5 0 0 .174 930 80 13 23 160 170
10 2764 2616 1797 2070 1872 2370 2275 .409 0 1 0 0 .393 930 80 13 23 171 181
11 2954 2664 50 1925 2277 1928 2441 2437 .396 0 .96 0 1 .456 911 80 13 23 182 192
12 3016 2728 1776 2336 2000 2532 2248 .351 0 .535 0 0 .294 911 80 13 23 193 203
13 3028 2736 5489 7607 5591 2342 2016 2552 7077 9629 0 0 .367 1.031 38 45 .982 .776 1.019 1.289 0 911 80 13 23 204 214 .367
14 2843 2752 3904 6835 4787 2110 2048 2592 6060 8652 0 0 .634 1.152 35 38 .816 .644 1.226 1.552 0 911 80 13 23 215 225 .634
15 2833 2720 1265 2748 700 2104 2048 2592 886 3478 .914 0 -.514 .592 35 30 1.807 1.428 .553 .7 .693 911 80 13 23 226 236 -.514
16 2820 2688 3664 7343 5343 2061 2000 2532 6763 9295 0 0 .884 1.17 32 35 .686 .542 1.458 1.846 0 931 80 13 23 237 247 .884
17 2801 2672 3158 5843 3875 2043 1968 2491 4905 7396 0 0 .635 .896 30 26 .815 .644 1.227 1.553 0 935 80 13 23 248 258 .635
18 2884 2712 2299 4036 2028 2118 2008 2542 2567 5109 .954 0 .159 .948 38 40 1.134 .896 .882 1.117 .973 930 80 13 23 260 270 .159
19 3162 2776 5513 10094 8014 2440 2080 2633 10144 12777 0 0 .88 1.425 35 38 .688 .543 1.454 1.84 0 930 80 13 23 271 281 .88
20 3194 2832 3288 6820 4692 2494 2128 2694 5939 8633 0 0 .853 1.392 37 43 .701 .554 1.427 1.806 0 914 80 13 23 282 292 .853

Total number of rows: 6400

Table truncated, full table size 814 Kbytes.




Supplementary data files not provided
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