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Status
Public on Dec 24, 2005
Title
Brn3a Knockout TG e13.5 U74Bv2 1
Sample type
RNA
Source name
e13.5 Trigeminal Ganglion
Organism
Mus musculus Characteristics
Brn3a mutant trigeminal ganglia pooled from e13.5 mouse embryos.
Extracted molecule
total RNA
Label
Affymetrix
Description
Trigeminal ganglia were dissected, placed in RNAse inhibitor solution (RNAlater, Ambion) and frozen until enough tissue was harvested to be pooled by genotype. Approximately 10-12 ganglia were pooled for a single analysis, which was extracted using the RNeasy system (Qiagen).
Data processing
MAS 5.0
Submission date
Dec 22, 2005
Last update date
Dec 23, 2005
Contact name
Eric Turner
E-mail(s)
eturner@ucsd.edu Phone
(858)534-1568
Fax
(858)534-7653
URL
http://medicine.ucsd.edu/neuroembryologylab/ Organization name
University of California San Diego
Department
Psychiatry
Street address
9500 Gilman Dr., BSB 2077
City
La Jolla
State/province
CA
ZIP/Postal code
92093-0603
Country
USA
Platform ID
GPL82 Series (2)
GSE3895 Coordinated regulation of gene expression by Brn3a in developing sensory ganglia
GSE5658 Conserved and distinct regulatory targets of Brn3a at different levels of the sensory axis
Data table header descriptions ID_REF VALUE Signal. A measure of the abundance of a transcript.
ABS_CALL Absolute analysis call. Indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE Detection P-value. Indicates the significance level of the detection call.
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE 104769_at
87.8
A
0.138725
104770_at
97.3
A
0.284747
104771_at
24.2
A
0.837065
104772_at
480.5
P
0.006532
104773_at
28
A
0.581931
104774_at
85.6
P
0.02786
104775_at
827.2
P
0.008689
104776_at
245.6
A
0.150527
104777_at
7.6
A
0.872355
104778_at
1149
P
0.000959
104779_at
409.3
A
0.339558
104780_at
100.2
A
0.35869
104781_at
475.2
P
0.00418
104782_at
1110.2
P
0.003067
104783_at
73.1
A
0.250724
104784_at
375.7
P
0.007543
104785_at
310.1
P
0.031336
104786_at
48.4
A
0.561639
104787_at
278.5
A
0.138765
104788_at
218.9
A
0.234557
12411 324 Kbytes .Supplementary data files not provided
