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Status
Public on Dec 24, 2005
Title
Brn3a Wildtype TG e13.5 U74Bv2 1
Sample type
RNA
Source name
e13.5 Trigeminal Ganglion
Organism
Mus musculus Characteristics
Brn3a wildtype trigeminal ganglia pooled from e13.5 mouse embryos.
Extracted molecule
total RNA
Label
Affymetrix
Description
Trigeminal ganglia were dissected, placed in RNAse inhibitor solution (RNAlater, Ambion) and frozen until enough tissue was harvested to be pooled by genotype. Approximately 10-12 ganglia were pooled for a single analysis, which was extracted using the RNeasy system (Qiagen).
Data processing
MAS 5.0
Submission date
Dec 22, 2005
Last update date
Dec 23, 2005
Contact name
Eric Turner
E-mail(s)
eturner@ucsd.edu Phone
(858)534-1568
Fax
(858)534-7653
URL
http://medicine.ucsd.edu/neuroembryologylab/ Organization name
University of California San Diego
Department
Psychiatry
Street address
9500 Gilman Dr., BSB 2077
City
La Jolla
State/province
CA
ZIP/Postal code
92093-0603
Country
USA
Platform ID
GPL82 Series (2)
GSE3895 Coordinated regulation of gene expression by Brn3a in developing sensory ganglia
GSE5658 Conserved and distinct regulatory targets of Brn3a at different levels of the sensory axis
Data table header descriptions ID_REF VALUE Signal. A measure of the abundance of a transcript.
ABS_CALL Absolute analysis call. Indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE Absolute analysis call. Indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE 104769_at
82
A
0.127645
104770_at
43.5
A
0.64131
104771_at
28.4
A
0.910595
104772_at
670.3
P
0.00418
104773_at
30.5
A
0.47938
104774_at
102.5
M
0.048995
104775_at
690.6
P
0.011447
104776_at
161.9
A
0.378184
104777_at
61.1
A
0.32083
104778_at
956.9
P
0.001892
104779_at
212
A
0.418069
104780_at
148.4
A
0.35869
104781_at
522.3
P
0.002617
104782_at
756.2
P
0.002617
104783_at
39.4
A
0.849473
104784_at
264.9
P
0.008689
104785_at
255.6
P
0.031336
104786_at
15.7
A
0.621816
104787_at
165.8
A
0.418069
104788_at
203.3
A
0.267463
12411 324 Kbytes .Supplementary data files not provided
