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Status |
Public on Apr 25, 2012 |
Title |
ime4-/- yeast grown in SPO rep1 |
Sample type |
RNA |
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Source name |
ime4-/- cells 4 hrs after transfer to meiosis-inducing media
|
Organism |
Saccharomyces cerevisiae |
Characteristics |
strain: SK1 genotype/variation: ime4-/- growth medium: SPO
|
Treatment protocol |
For sporulation yeast cells were transferred to SM (sporulation medium, 1% Kacetate)
|
Growth protocol |
Yeast are grown vegetatively in YPD (Yeast extract, Peptone, Dextrose) medium
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
Label |
biotin
|
Label protocol |
Biotinylated cDNA were prepared according to the standard Affymetrix protocol from 600 ng total RNA (Affymetrix wt_sensetarget_label_manual)
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Hybridization protocol |
Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on yeast 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
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Scan protocol |
affymetrix scanner
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Data processing |
Feature intensity values from scanned arrays were normalized and reduced to expression summaries using the RMA algorithm. Control probes, probesets with an interquartile range below 0.1 were removed;
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Submission date |
Mar 30, 2012 |
Last update date |
Apr 25, 2012 |
Contact name |
Sharon Moshitch-Moshkovitz |
E-mail(s) |
sharon.moshkovitz@sheba.health.gov.il
|
Organization name |
Sheba Medical Center
|
Department |
Cancer Research Center
|
Street address |
Laboratory wing
|
City |
Tel-Hashomer |
ZIP/Postal code |
52621 |
Country |
Israel |
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|
Platform ID |
GPL2529 |
Series (2) |
GSE36958 |
Gene expression profiles of WT and ime4-/- mutant yeast cells, under vegetative and meiosis-inducing conditions |
GSE37005 |
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq |
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