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Sample GSM923092 Query DataSets for GSM923092
Status Public on Sep 14, 2012
Title WT_B_3.CEL
Sample type RNA
 
Source name CENPK1137D
Organism Saccharomyces cerevisiae CEN.PK113-7D
Characteristics cultivation protocol: Batch
Treatment protocol biomass samples were taken at steadystate, cooled down imeediately and centrifuged with cooling, The cell prllets were frozen in liquid nitrogen
Growth protocol Batch and Chemostat cultivation on glucose
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from frozen cell pellets using FastRNA® Pro RED kit (QBiogene, Inc, USA)
Label biotin
Label protocol Labelling was done according to the Affymetrix GeneChip Expression Analysis Technical Manual.
 
Hybridization protocol Samples were hybridized with GeneChip yeast2 Arrays (Affymetrix)
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix) by A GeneChip Fluidics Station FS-400 and GeneChip Scanner 3000 7G
Description SRA accession from the same sample: SRR453568
Data processing Probe Logarithmic Intensity Error (PLIER)
 
Submission date Apr 26, 2012
Last update date Sep 14, 2012
Contact name Intawat Nookaew
E-mail(s) inookaew@uams.edu
Organization name University of Arkansas for Medical Sciences
Department Department of Biomedical Informatics
Street address 4301 W Markham St
City Little Rock
ZIP/Postal code 72205
Country USA
 
Platform ID GPL2529
Series (1)
GSE37599 Expression data of Saccharomyces cerevisiae CEN.PK.113-7D grew in Batch and Chemostat condition using for comparison of RNA-seq and Microarray data

Data table header descriptions
ID_REF
VALUE Normalized and log2-transformed expression value indexes

Data table
ID_REF VALUE
1769308_at 7.282068338
1769309_at 5.714856209
1769310_at 6.035729471
1769311_at 9.576067132
1769312_at 7.521323531
1769313_at 7.342874813
1769314_at 9.115860265
1769315_at 5.258285759
1769316_s_at 5.122724781
1769317_at 7.680684082
1769318_at 5.08842919
1769319_at 8.913562794
1769320_at 6.638277848
1769321_at 5.385394672
1769322_s_at 7.090271782
1769323_at 7.735143341
1769324_at 7.159624974
1769325_at 6.184888696
1769326_at 5.218957246
1769327_at 5.183944271

Total number of rows: 10928

Table truncated, full table size 246 Kbytes.




Supplementary file Size Download File type/resource
GSM923092_WT_B_3.CEL.gz 771.9 Kb (ftp)(http) CEL
Processed data included within Sample table

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