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GEO accession:
Sample GSM94357
Query DataSets for GSM94357
Status
Public on Jul 01, 2006
Title
PBMCs from an HIV positive non-transmitter mother in Botswana (5)
Sample type
RNA
Source name
Human peripheral blood mononuclear cells (PBMCs) from an HIV positive Batswana woman
Organism
Homo sapiens
Characteristics
Botswana mother between 17 and 44 years old. HIV positive. Did not transmit virus to child.
Extracted molecule
total RNA
Label
Biotin
Description
HIV seropositive and drug naive
HIV seropositive nontransmitter mothers
Data processing
Data scaled with GCOS
Submission date
Jan 30, 2006
Last update date
Sep 13, 2006
Contact name
Monty Montano
E-mail(s)
mmontano@bu.edu
Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm
Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571
Series (1)
GSE4124
Gene-expression profiling of HIV-1 infection and perinatal transmission in Botswana
Data table header descriptions
ID_REF
VALUE
GCOS scaled intensity values
DETECTION_P-VALUE
Quality of measurement
ABS_CALL
Present, absent or marginal call
SCALED_VALUE
Scaled intensity values
Data table
ID_REF
VALUE
DETECTION_P-VALUE
ABS_CALL
SCALED_VALUE
1007_s_at
33.6
0.098054
A
213.9984
1053_at
21.8
0.017001
P
138.8442
117_at
531.2
0.000219
P
3383.2128
121_at
57.4
0.043968
P
365.5806
1255_g_at
5
0.267428
A
31.845
1294_at
198.5
0.001892
P
1264.2465
1316_at
9.8
0.048967
P
62.4162
1320_at
4.6
0.64131
A
29.2974
1405_i_at
2266.4
0.000491
P
14434.7016
1431_at
2.4
0.098017
A
15.2856
1438_at
1.5
0.602006
A
9.5535
1487_at
55.6
0.021866
P
354.1164
1494_f_at
11.6
0.162935
A
73.8804
1598_g_at
43.5
0.014937
P
277.0515
160020_at
26.2
0.019304
P
166.8678
1729_at
64.3
0.000673
P
409.5267
177_at
12
0.043968
P
76.428
1773_at
3.2
0.418069
A
20.3808
179_at
68
0.189648
A
433.092
1861_at
22.9
0.035163
P
145.8501
Total number of rows:
22277
Table truncated, full table size
757 Kbytes
.
Supplementary data files not provided
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